BAC Information

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BAC

Clone NameMSMg01-295N19
Chromosome2 (Build37)
Map Location 49,889,343 - 49,889,648
singlet/doubletsinglet
Overlap genenone
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295N19.T7 (MSMg01no295_n19.b1)MSMg01-295N19.TJ (MSMg01no295_n19.g1)
ACCAG423632AG423633
length739745
length of high quality
(start - end)
359 (381 - 739)306 (437 - 742)
definitionCHROMAT_FILE: MSMg01no295_n19.b1 PHD_FILE: MSMg01no295_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:54 2005CHROMAT_FILE: MSMg01no295_n19.g1 PHD_FILE: MSMg01no295_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAATGTACCACA
TTTTCTGTATCCATTCTTCTGCTGAAGGACATCTGGCTTCTTTCCAGCTT
CTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTT
GTTATGTGTTGGAGAATTTTTTGGGTATATGTGCAGGAGTGGTATAGCTG
GGTCCTCAGGTAATACTAAGTCCAATATCTGAGGAACTGCCAAACTGATT
TCCAAAGTAGTTGTACCAGCTTGCAATTCCACCAACAATGGAGGAGTGTT
CCTCTTTCTCTTTTATCGCACCCCCCCCTGCTGTCGTCGACCTTAGCCAT
TCTGACTGGTGTGAACCGCAATCTCAAGAATGCTTTGATTTGCATTACTC
TGATGACTAAGGATGTTAAACATTTCTTTAGGTGCTTCTGGACCATTCAA
TATTCCACAGTTGAAAATTCTTTGTTTAGCTCTGTACCCCATTTTAATAA
GGTTATTTGATTCTTTGGAGTCTACCTTCTTGAGTTCTTTGTATATATTG
GATATTAGCCCTCTATCGAATGTAGGATTGGTAAAGATCTTTTCTCAATC
TGTTGGTTGCCATTTTGTTTTATTGACAGTGTCCTTATAGAAGCTTTGCA
ATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTAGAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGTTCCTAAACAAAAGGCAC
TAAGAGGACTCAAGATGTCTCTGGCGTTTCAGTAACAACATGAGGCATTT
AGATGGCCACAGTGACTCTGTGCAGGTGTGTTTGTGAACACTCTTGTCAC
ATCATGTCAACTATATGAAAATGAACTGACAACCCACCCTTAAGTAATCA
AATAAATCTAACCATGTAAGAGCTAAGTTGCAGTTACAGGTTCCCATGTT
GTACTTTCAGAAATAAAACCTTTATTAGAGAGAATAGTGGCATGTGCCAG
GGATCCCAGCACTTTTTTTTCTGACGAACCACAGTCATGGGTTCGAGGTC
AGCCTGGGCTACAGATGGCACTGCAGGGATGTGTGTGCTATGTAGTAAGA
TGTTACCTCAAAACATTTTAGCTTTTTTTTTTTAATGTCTGGATGCAATT
AGCTTTTGTTTTCGCTTTTTCACATCTCAAAACATTTTCACAGGTCTTCG
GAAATCCTCGTGGACAAATCAAGTCCTCAGTCAATTATATCCATGGTGCT
CAATGGATTAAAACATGTCCAGTGGAACACTTTCTATGGCAGCCGACTTG
TCCTCCTGCTCCTCATAAGTTTAGCAGAGTTTACAGAAGGAGATGACCTC
AGACCAGTGTCTGATTCTATCACTGACATGAGGCAAACCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_n19.g1 MSMg01no295_n19.g1 CHROMAT_FILE:
MSMg01no295_n19.g1 PHD_FILE: MSMg01no295_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:54 2005
         (306 letters)



>mm_chr2_49889143_49889848
          Length = 706

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctatgtagtaagatgttacctcaaaacattttagctttttttttttaatgtctggatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctatgtagtaagatgttacctcaaaacattttagctttttttttttaatgtctggatgc 260

                                                                       
Query: 61  aattagcttttgttttcgctttttcacatctcaaaacattttcacaggtcttcggaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattagcttttgttttcgctttttcacatctcaaaacattttcacaggtcttcggaaatc 320

                                                                       
Query: 121 ctcgtggacaaatcaagtcctcagtcaattatatccatggtgctcaatggattaaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctcgtggacaaatcaagtcctcagtcaattatatccatggtgcccaatggattaaaacat 380

                                                                       
Query: 181 gtccagtggaacactttctatggcagccgacttgtcctcctgctcctcataagtttagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccagtggaacactttctatggcagccgacttgtcctcctgctcctcataagtttagca 440

                                                                       
Query: 241 gagtttacagaaggagatgacctcagaccagtgtctgattctatcactgacatgaggcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtttacagaaggagatgacctcagaccagtgtctgattctatcactgacatgaggcaa 500

                 
Query: 301 accttt 306
           ||||||
Sbjct: 501 accttt 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)