Query= MSMg01no296_m23.b1 MSMg01no296_m23.b1 CHROMAT_FILE:
MSMg01no296_m23.b1 PHD_FILE: MSMg01no296_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:06 2005
(290 letters)
>mm_chr2_50311977_50312666
Length = 690
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Plus
Query: 1 tctcctgctaatgctctacaatttcctggccccagggaatgtgcttttatctctacagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctgctaatgctctacaatttcctggccccagggaatgtgcttttatctctacagta 260
Query: 61 ctgtgttttctgtaatttgacttagcatttgttcagtagattaaaaacccttgtctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgttttctgtaatttgacttagcatttgttcagtagattaaaaacccttgtctcttt 320
Query: 121 aggtttatgatgttgaggctggcacctcccccagccttaggaactctgcccctagatcac 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aggtttatgatgttgaggctggtacctcccccagccttaggaactctgcccctaaatcac 380
Query: 181 tgcttacagctcctggctgagacagtctaacttcatgtctatatttgcctgacccttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttacagctcctggctgagacagtctaacttcatgtctatatttgcctgacccttatc 440
Query: 241 ttagaccatgggaacttggtaatgctttctcttgcttatctaagatgttc 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagaccatgggaacttggtaatgctttctcttgcttatctaagatgttc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_m23.g1 MSMg01no296_m23.g1 CHROMAT_FILE:
MSMg01no296_m23.g1 PHD_FILE: MSMg01no296_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:06 2005
(658 letters)
>mm_chr2_50311977_50313037
Length = 1061
Score = 1224 bits (633), Expect = 0.0
Identities = 653/661 (98%), Gaps = 3/661 (0%)
Strand = Plus / Plus
Query: 1 tctcctgctaatgctctacaatttcctggccccagggaatgtgcttttatctctacagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctgctaatgctctacaatttcctggccccagggaatgtgcttttatctctacagta 260
Query: 61 ctgtgttttctgtaatttgacttagcatttgttcagtagattaaaaacccttgtctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgttttctgtaatttgacttagcatttgttcagtagattaaaaacccttgtctcttt 320
Query: 121 aggtttatgatgttgaggctggcacctcccccagccttaggaactctgcccctagatcac 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aggtttatgatgttgaggctggtacctcccccagccttaggaactctgcccctaaatcac 380
Query: 181 tgcttacagctcctggctgagacagtctaacttcatgtctatatttgcctgacccttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttacagctcctggctgagacagtctaacttcatgtctatatttgcctgacccttatc 440
Query: 241 ttagaccatgggaacttggtaatgctttctcttgcttatctaagatgttctcaggccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagaccatgggaacttggtaatgctttctcttgcttatctaagatgttctcaggccaga 500
Query: 301 actaaagggggggggg---gtcttttatctctaacctaaatgcttgctatcagaagtatc 357
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 501 actaaaggggggggggggtgtcttttatctctaatctaaatgcttgttatcagaagtatc 560
Query: 358 tgtttggccatggcagagcggcaaactggctgtgtgctatgtggggttggaagtcacatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttggccatggcagagcggcaaactggctgtgtgctatgtggggttggaagtcacatg 620
Query: 418 actgtgaggacactggatagtattccatgaaacgtcccttgtctttgccccttctggtgt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgtgaggacactggatagtattccatgaaacgtcccttgtctttgccccttctggtgt 680
Query: 478 tcctgtactaattcttcttcccataattttccctgtgacatatttacttccaacctttta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctgtactaattcttcttcccataattttccctgtgacatatttacttccaacctttta 740
Query: 538 tatataagtgaactagtttagctatgaagagctgatacccaacagactgccattttttcc 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatataagtgaactagtttaactatgaagagctgatacccaacagactgccattttttcc 800
Query: 598 caaattcatgttctgtgttgatgatcaaagcttgtgactactacattacttagtggaggt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaattcatgttctgtgttgatgatcaaagcttgtgactactacattacttagtggaggt 860
Query: 658 g 658
|
Sbjct: 861 g 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1061
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1051
Effective search space: 681048
Effective search space used: 681048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
