Query= MSMg01no297_b08.b1 MSMg01no297_b08.b1 CHROMAT_FILE:
MSMg01no297_b08.b1 PHD_FILE: MSMg01no297_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:26 2005
(705 letters)
>mm_chr2_88368622_88369726
Length = 1105
Score = 1299 bits (672), Expect = 0.0
Identities = 696/704 (98%), Gaps = 1/704 (0%)
Strand = Plus / Plus
Query: 3 ggaattccaaattccagagacattaaataagactttcattcaaaacttaaatgttcaatt 62
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattccaaattccagagatattaaataagactttcattcaaaacttaaatgttcaatt 261
Query: 63 taaatgtaccaattccaactgcaatatgttgactgtcacaaaaaaaaaaatgtggaatgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaatgtaccaattccaactgcaatatgttgactgtcacaaaaaaaaaaatgtggaatgt 321
Query: 123 cctaaaagatattcatctgggcaggtctgtgtgggatgatccagcttatgttgattaggt 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctaaaagatattcatctgggcaggtctgtgtgggatgatccagcttatgttgattaggc 381
Query: 183 aggtagacaccccttagctgtagatatttcaactccatggcatgggg-tcttgtggactg 241
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 382 aggtagacaccccttagctgtagatatttcaactccatggcatgggggtcttgtggactg 441
Query: 242 aagaaaaagaggaagattttgatttttctgtctttgattcctgactgtggatgcaatctt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagaaaaagaggaagattttgatttttctgtctttgattcctgactgtggatgcaatctt 501
Query: 302 cttagttgccctaggctattgccatcatgactctcttgctatatgaggaccataccatca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttagttgccctaggctattgccatcatgactctcttgctatatgaggaccataccatca 561
Query: 362 acctggaggacagaataaaccattgtgtcttcagcttaatctatgagattttccataata 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 acctggaggacagaataaaccattgtgtcttcaacttaatctatgagattttccataata 621
Query: 422 atatgaatgatattaataatatgaactaataaaaaccattgcttttttcctatagcatag 481
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atatgaattatattaataatatgaactaataaaaaccattgcttttttcctatagcatag 681
Query: 482 ttctataacaaatgaatacaccaactaactagttatttcaaaacagctggtagaaaaatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttctataacaaatgaatacaccaactaactagttatttcaaaacagctggtagaaaaatt 741
Query: 542 taagagtgctatcaatacaaggaagttatagctgcttgaggattaggaatatgcccattt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taagagtgctatcaatacaaggaagttatagctgcttgaggattaggaatatgcccattt 801
Query: 602 ccctgttctggtcattacacatatttaaaacatatttcgcttgcataatattgtacatat 661
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct: 802 ccctgttctggtcattacacatacttaaaacatattttgcttgcataatattgcacatat 861
Query: 662 gttaaaatgtaatactttactcaataccttttataattatcatg 705
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gttaaaatgtaatactttactcaataccttttataattatcatg 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no297_b08.g1 MSMg01no297_b08.g1 CHROMAT_FILE:
MSMg01no297_b08.g1 PHD_FILE: MSMg01no297_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:26 2005
(689 letters)
>mm_chr2_88530498_88531586
Length = 1089
Score = 1234 bits (638), Expect = 0.0
Identities = 679/694 (97%), Gaps = 6/694 (0%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgagcccca-tttttaatggggttatttgattttctggagtccacctt 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tttgtttagctctgagccccattttttaatggggttatttgattttctggagtccacctt 769
Query: 60 cttgagttctttatttatattggatattagtcctctatctgatttaggataggtaaatat 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cttgagttctttatatatattggatattagtcctctatctgatttaggataggtaaatat 709
Query: 120 cctttctcaatctgttggtggcctttttgtcttattgacggtgtcttttgccttacagaa 179
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 708 ccttgctcaatctgttggtggcctttttgtcttattgatggtgtcttttgccttacagaa 649
Query: 180 gctttgcagtttcatgaggtcccattcgtcaattctcgatcttacagcacaagccattgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gctttgcagtttcatgaggtcccattcgtcaattctcgatcttacagcacaagccattgc 589
Query: 240 tgtttctctatgggctgtagggtagccatctgatttcattttcagctattccctccataa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgtttctctatgggctgtagggtagccatctgatttcattttcagctattccctccataa 529
Query: 300 taatatttgtaaataccttgtcagttcactatgtgtggtatgatatctgcctccctccct 359
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 528 taatatttgtaaataccttgtcagttcactatgtgtggtctgatatcttcctccctccct 469
Query: 360 tgctcccttcttctatatggtaagaccaatatatatcaaagacacatgctccactttgtt 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 468 tgctcccttcttctatatggtaagaccaacatatatcaaagacacatgctccactttgtt 409
Query: 420 catagaagccttatttataatagccagaagatggaatggacccagattttcttcaacaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 catagaagccttatttataatagccagaagatggaatggacccagattttcttcaacaga 349
Query: 480 ttaatagatatagaaaatatgttacacttataaaatggaatactacacagctactaaaa- 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 348 ttaatagatatagaaaatatgttacacttataaaatggaatactacgcagctattaaatt 289
Query: 539 --acaatgaatttgtgaaattcttatgaaaatgaatggaagtagaaaatatcctttagtg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 tcacaatgaatttgtgaaattcttatgaaaatgaatggaagtagaaaatatcctt-agtg 230
Query: 597 aggtaacccaatcacaaaagaacatacatgttatacactcactgataagtgtattgataa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aggtaacccaatcacaaaagaacatacatgttatacactcactgataagtgtattgataa 170
Query: 657 gtgtatattagcccaaa-gctcagaatacccaag 689
||||||||||||||||| ||||||||||||||||
Sbjct: 169 gtgtatattagcccaaaagctcagaatacccaag 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
