BAC Information

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BAC

Clone NameMSMg01-297H02
Chromosome2 (Build37)
Map Location 83,891,276 - 83,961,509
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297H02.T7 (MSMg01no297_h02.b1)MSMg01-297H02.TJ (MSMg01no297_h02.g1)
ACCAG424770AG424771
length766762
length of high quality
(start - end)		682 (73 - 754)631 (74 - 704)
definitionCHROMAT_FILE: MSMg01no297_h02.b1 PHD_FILE: MSMg01no297_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:53 2005CHROMAT_FILE: MSMg01no297_h02.g1 PHD_FILE: MSMg01no297_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,891,276 - 83,891,957)(83,961,151 - 83,961,509)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGA
ATTCCTAATGTATCACATAGAAACAAATAATGAAAAAAAGGGTCCATAGA
TTTGAAAGAATTCAAGGAGGGGCTTGGAGGGAGAAAAAAAGGAGGAAAAT
ATAATTATAATCCGTCAAAAGGAAGAAATCATAACAATAATAGCAGTAAA
AAATTCAGTGCTTGAGAGATGGTATAGTGGTGGATGAGAGATGGTGTAGT
GGTTGAAAACATTTATTGCACTTGCAGAGGGTCTAGGTTCAGTTCCCAGC
ACCCATATGCTGGTCCACAGCCATTCATAGTTCCAATTCCAGAGGATCCA
ACTTCCACTTCTGACTTCTGCAGGCATCAGAGATGCAAGCAAAACATTTA
TACACCTACAGTAACAGATAAACAGATTAAAAAAAAAAAGCAATAAAAAC
AAATTGTTCTCTAATAAAAAAGAAAAAACAGGTAGAAGTCTTTTAATATG
ATGAAAGTAGAAAACCTTTAATGTTTTATAATGTGAAACACTTGGAGACG
TGCTATGCCCCAATCCCTAGAGTCATAGAATTTAAAATCTATTTTCAAAT
ATTTTATTTTAATTAACAAAAGCCTCCAATAAAATTTTAATAACCTTTGA
CACATATTATTATAGTTAGGTAGTAAGTTTAATGAAAGTGAAGCACGTAT
CCTTAAATTTAATATAAGATGTAAAAACAAGCATAGCTACTTGTCCTATT
ACTAAAACTTAGATTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCAGAAGGGTTGATCTTGTTTTCTAA
ATCAATCTGTTGGCCTATGTCTTTTTTATGCAGAATTATGAATGTTGATT
TTGAGAATTATCAATGATCAATGTTTAGAGTTCTGGGATTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTATGTGGAGCTTACTATCTAGAATTATTTA
TTCCTGTGTCTTAGGTATGGTTAACCTCTTATGACTGAAGTTTTCTGTAT
GGTGCTTGTATACCTTGATAGGCATCTCCTTTTATAGGTTGGGGATTTTT
AATATGATTTTATTAAAAATATTTTCTATGCACTTGACCTTTATGTCTCT
ATTATTCATTTGTTTTGTCTTTTTATAATGTCAAATGTCTGGTATGTTTT
GTTCCTGGACTTTATAACCTCTCTTTGAATAAGCTATCCATTTCTGGTAT
TCACGACCTGAAATTCTCTTTTCCACACCTTTTAATCTGTTAGTGTTATA
TGTTGTTTCCCTGGTAGAGAATGCTTCTGCAGATAGGCAGGTGACACAAA
GAGTTACGAGATAGTCTAGGAGGAAAGGCTAAGAGGAGACCTGGAAAAGA
TGTAGGGGACCAGAGTTGTACCAAGAGATAGAGTCTTTGGGGAATGGAGG
TAGGTTGGGAGGAGGGGCTTCTACAAGCAGCCTGCTTACGGATTACGAGG
AAGTCTTGATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_h02.b1 MSMg01no297_h02.b1 CHROMAT_FILE:
MSMg01no297_h02.b1 PHD_FILE: MSMg01no297_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:53 2005
         (682 letters)



>mm_chr2_83891076_83892157
          Length = 1082

 Score = 1311 bits (678), Expect = 0.0
 Identities = 681/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaataatgaaaaaaagggtccatagatttgaaagaattcaaggaggggcttggaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaataatgaaaaaaagggtccatagatttgaaagaattcaaggaggggcttggaggga 260

                                                                       
Query: 61  gaaaaaaaggaggaaaatataattataatccgtcaaaaggaagaaatcataacaataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaaaaggaggaaaatataattataatccgtcaaaaggaagaaatcataacaataata 320

                                                                       
Query: 121 gcagtaaaaaattcagtgcttgagagatggtatagtggtggatgagagatggtgtagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtaaaaaattcagtgcttgagagatggtatagtggtggatgagagatggtgtagtgg 380

                                                                       
Query: 181 ttgaaaacatttattgcacttgcagagggtctaggttcagttcccagcacccatatgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaaacatttattgcacttgcagagggtctaggttcagttcccagcacccatatgctg 440

                                                                       
Query: 241 gtccacagccattcatagttccaattccagaggatccaacttccacttctgacttctgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccacagccattcatagttccaattccagaggatccaacttccacttctgacttctgca 500

                                                                       
Query: 301 ggcatcagagatgcaagcaaaacatttatacacctacagtaacagataaacagattaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcatcagagatgcaagcaaaacatttatacacctacagtaacagataaacagattaaaa 560

                                                                       
Query: 361 aaaaaaagcaataaaaacaaattgttctctaataaaaaagaaaaaacaggtagaagtctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 aaaaaaagcaataaaaacaaattgttctctaataaaaaagaaaaaacaggtagaagtttt 620

                                                                       
Query: 421 ttaatatgatgaaagtagaaaacctttaatgttttataatgtgaaacacttggagacgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatatgatgaaagtagaaaacctttaatgttttataatgtgaaacacttggagacgtg 680

                                                                       
Query: 481 ctatgccccaatccctagagtcatagaatttaaaatctattttcaaatattttattttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatgccccaatccctagagtcatagaatttaaaatctattttcaaatattttattttaa 740

                                                                       
Query: 541 ttaacaaaagcctccaataaaattttaataacctttgacacatattattatagttaggta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaacaaaagcctccaataaaattttaataacctttgacacatattattatagttaggta 800

                                                                       
Query: 601 gtaagtttaatgaaagtgaagcacgtatccttaaatttaatataagatgtaaaaacaagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtaagtttaatgaaagtgaagcacgtatccttaaatttaatataagatgtaaaaacaagc 860

                                 
Query: 661 atagctacttgtcctattacta 682
           ||||||||||||||||||||||
Sbjct: 861 atagctacttgtcctattacta 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_h02.g1 MSMg01no297_h02.g1 CHROMAT_FILE:
MSMg01no297_h02.g1 PHD_FILE: MSMg01no297_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:53 2005
         (631 letters)



>mm_chr2_83960479_83961509
          Length = 1031

 Score =  694 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Minus

                                                                        
Query: 273  tttttaatatgattttattaaaaatattttctatgcacttgacctttatgtctctattat 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 tttttaatatgattttattaaaaatattttctatgcacttgacctttatgtctctattat 972

                                                                        
Query: 333  tcatttgttttgtctttttataatgtcaaatgtctggtatgttttgttcctggactttat 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  tcatttgttttgtctttttataatgtcaaatgtctggtatgttttgttcctggactttat 912

                                                                        
Query: 393  aacctctctttgaataagctatccatttctggtattcacgacctgaaattctcttttcca 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  aacctctctttgaataagctatccatttctggtattcacgacctgaaattctcttttcca 852

                                                                        
Query: 453  caccttttaatctgttagtgttatatgttgtttccctggtagagaatgcttctgcagata 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  caccttttaatctgttagtgttatatgttgtttccctggtagagaatgcttctgcagata 792

                                                                        
Query: 513  ggcaggtgacacaaagagttacgagatagtctaggaggaaaggctaagaggagacctgga 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  ggcaggtgacacaaagagttacgagatagtctaggaggaaaggctaagaggagacctgga 732

                                                                       
Query: 573  aaagatgtaggggaccagagttgtaccaagagatagagtctttggggaatggaggtagg 631
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  aaagatgtaggggaccagagttgtaccaagagatagagtctttggggaatggaggtagg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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