BAC Information

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BAC

Clone NameMSMg01-297K20
Chromosome2 (Build37)
Map Location 163,844,708 - 163,845,156
singlet/doubletsinglet
Overlap genenone
Upstream geneIft52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab
Downstream geneLOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297K20.T7 (MSMg01no297_k20.b1)MSMg01-297K20.TJ (MSMg01no297_k20.g1)
ACCAG424937AG424938
length722842
length of high quality
(start - end)
605 (46 - 650)63 (70 - 132)
definitionCHROMAT_FILE: MSMg01no297_k20.b1 PHD_FILE: MSMg01no297_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:10 2005CHROMAT_FILE: MSMg01no297_k20.g1 PHD_FILE: MSMg01no297_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCGCGGA
ATTCCTTCTTTACCAAGAGGAATTCTGGACTGGCGGCGTGGCCTCAGCCG
CATGTCTTTTTACCTACAGCATGGTCCACTGCAACTGCCACTACTGCCTG
CTTACAATCCTGACCCACAAATACCTTCCGAGACTGTAACATACTTTCTT
GTCCAGCAGCTGCTTGTTTGAGGGGGTATAACACTTACCTGGAAGACCCT
ATTACAGAGGCAAACAGCCACTTGGGGGTTTCCCTGACACTTGGCTCAGT
TATATGTCTTATCACCTATAGGTGGGGCTATTACCTACTTCTTCCAGACT
CATCTTTGGTTTGGTGAATGGAGTATCACAGGCCTTTTCCTAGGGAGACA
TGAAGACACATCCCCCCATTCCAGATAGGGATGATACTGAGACTGAAGAA
AGGATTCCACCCACGTCCAGATTGGCAAACCAGTTGAGTTTTACTGGGCT
ACTGACAGGACGGAGCATAGTGGGCTCTAAGGCAGCTGCATCACTGTCAG
GTCCCCTGCACCTTTAATGGTCACACCACCAGCAGTGCAGTCTGTGCCTG
TCCAGCCAAAGTGCTCATGTAACCTTACGGAACATGCCCCACCCCCTCGA
ATAGAAAGGCGTGGGAGGGTCTTGCACAGGCGATCATGGCTGCTCTGGTT
CAGTCGGCATTGTTCACATCCN
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGTACCCCGCAATTCTGGGCACTTTTCAGAGGGCATATAAAT
GCTGGGGCCTAATGGCGTTAGTGGGTGTTGGTTGTTTTGATAAGGCACCC
CACCCCCCCCCAACCCATACCCATACCTCCTCAACTCTACACCACCCCAC
CCACCTCCCCTCCCCCCCCACCATCAACAACCTCACCCCATTATTTCCCC
AATCCCACCCCACCCCACCCCTCACCCCCACACCAAAAATACCACCATTT
TCCCCCTTCCTTTTTTTTTTCCCTCCCCCCATCCTTTTTTTTCCAACCTT
ATATTTACCACACACCCCCCCACCCCCTATCCCTCATAATTTTTCTCAAT
TCTCACCCCCACTCCCTCCCCCCCCCCCCTTACCCCCCCCCCCCCCTTTT
TTAACTCTCCCCTTCCCCCCCCTTCTACAACTATTCACACCCACTCCTCC
CCCCATCCTCTCTCCCACCACCCAACCCACCTCCCCACTCCCCCCCAACC
ACTCACCTATTTCACCATTACCCAAACCCCCTCTATTCTCCACCCAATCA
TCCCACCTCATCCCCCTCAATCATTTAACTCCTCACCCCTATCTATACTT
ATTCAACCACCCCCCTCATCCTATCACCCCCCTCCATACCTTCTCCCCTA
TTCCACTCCACTTATCCCCACCCCATATTCTCATCCTTTTCTTATACCCC
ACATCCCCCCCCCCACATCATACTACATCCCCCACACCTCCCCACCACCC
CTCTTATTACCCCTCCCCCTTCCCTTCCCTCTCCCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_k20.b1 MSMg01no297_k20.b1 CHROMAT_FILE:
MSMg01no297_k20.b1 PHD_FILE: MSMg01no297_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:10 2005
         (605 letters)



>mm_chr2_163844708_163845712
          Length = 1005

 Score =  791 bits (409), Expect = 0.0
 Identities = 439/453 (96%), Gaps = 8/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccttctttaccaagaggaattctggactggcggcgtggcctcagccgcatgtct 62
           |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaattccttctttaggaaggggaattctggactggcggcgtggcctcagccgcatgtct 390

                                                                       
Query: 63  ttttacctacagcatggtccactgcaactgccactactgcctgcttacaatcctgaccca 122
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 ttttacctacagcatggtccactgcaactgacactactgcctgcttacaatcctgaccca 330

                                                                       
Query: 123 caaataccttccgagactgtaacatactttcttgtccagcagctgcttgtttgagggggt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaataccttccgagactgtaacatactttcttgtccagcagctgcttgtttgagggggt 270

                                                                       
Query: 183 ataacacttacctggaagaccctattacagaggcaaacagccacttgggggtttccctga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataacacttacctggaagaccctattacagaggcaaacagccacttgggggtttccctga 210

                                                                       
Query: 243 cacttggctcagttatatgtcttatcacctataggtggggctattacctacttcttccag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cacttggctcagttatatgtcttatcacctataggtggggctattacctacttcttccag 150

                                                                       
Query: 303 actcatctttggtttggtgaatggagtatcacaggccttttcctagggagacatgaagac 362
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gctcatctttggtttggtgaatggagtatcacaggccttttcctagggagacatgaagac 90

                                                                       
Query: 363 acatccccc----cattccagatagggatgatactgagactgaagaaaggattccaccca 418
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  acat----ctgttcattccagatagggatgatactgagactgaagaaaggattccaccca 34

                                            
Query: 419 cgtccagattggcaaaccagttgagttttactg 451
           ||||||| |||||||||||||||||||||||||
Sbjct: 33  cgtccagtttggcaaaccagttgagttttactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)