Query= MSMg01no297_p06.b1 MSMg01no297_p06.b1 CHROMAT_FILE:
MSMg01no297_p06.b1 PHD_FILE: MSMg01no297_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:31 2005
(641 letters)
>mm_chr2_139330330_139331373
Length = 1044
Score = 745 bits (385), Expect = 0.0
Identities = 411/421 (97%), Gaps = 5/421 (1%)
Strand = Plus / Minus
Query: 5 gaattcagatgatttgatttcttttgtttcttccttgattctaagatactgtatttgggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattcagatgatttgatttcttttgtttcttccttgattctaagatactgtatttgggg 361
Query: 65 gcataccccaaaca-ccttggttgccaaactagaccaaatgtggagtggtatttgacaga 123
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcataccccaaacatcc-tggttgccaaactagaccaaatgtggagtggtatttgacaga 302
Query: 124 agcacacatccatttgagcctgaaaaagaaattgctatttttctttgagtttgactactg 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcacacatccattggagcctgaaaaagaaattgctatttttctttgagtttgactactg 242
Query: 184 tt---ctgtcctgtgtttattaagatttggttctttgactcaagaagaacgaagaccaaa 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctcctgtcctgtgtttattaagatttggttctttgactcaagaagaacgaagaccaaa 182
Query: 241 gtgtgaatactttgccccttcttagaattgggaacaaaacacccatggaaggagttacag 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgtggacactttgccccttcttagaattgggaacaaaacacccatggaaggagttacag 122
Query: 301 agacaaagtttggagctgagacgaaaggatggaccatctagagactgccatatccaggga 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacaaagtttggagctgagatgaaaggatggaccatctagagactgccatatccaggga 62
Query: 361 tccatcccataatcagcctccaaacgctgacaccattgcatacattagcaagattttgct 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 tccatcccataatcagcctccaaatgctgacaccattgcatacattagcaagattttgct 2
Query: 421 g 421
|
Sbjct: 1 g 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1044
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1034
Effective search space: 652454
Effective search space used: 652454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_p06.g1 MSMg01no297_p06.g1 CHROMAT_FILE:
MSMg01no297_p06.g1 PHD_FILE: MSMg01no297_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:31 2005
(580 letters)
>mm_chr2_139139463_139140444
Length = 982
Score = 988 bits (511), Expect = 0.0
Identities = 564/597 (94%), Gaps = 27/597 (4%)
Strand = Plus / Plus
Query: 1 cccatctattactgccctcttctcttgccctgttcttttatgggaaaaaaaaaa------ 54
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 196 cccatctattactgcccacttctcttgccctgttcttttatggg----------gggggg 245
Query: 55 --cattagctgtcttcaccaacagaatacaatgtagatacagacaggaactacagtttgc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggcattagctgtcttcaccaacagaatacaatgtagatacagacaggaactacagtttgc 305
Query: 113 tcattactcttattccagaattgagggtatgttgtaggacttcaataaaattcagaaagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcattactcttattccagaattgagggtatgttgtaggacttcaataaaattcagaaagc 365
Query: 173 aagggaataattgaaaaatagaggctgacaggctctttttaaatatttctggtattctta 232
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 366 aagggaataattgaaaaatagaggctgacaggatctttttaaatatttctggtattctta 425
Query: 233 tgcaattggactattctgtcatgactaccacatgctctataaatgtaataattttcttct 292
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgcaattggactattttgtcatgactaccacatgctctataaatgtaataattttcttct 485
Query: 293 ctagcagtgactgcatttgcaattgtaatcatcacactgcctagcacatgccatctttgc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctagcagtgactgcatttgcaattgtaatcatcacactgcctagcacatgccatctttgc 545
Query: 353 ttctgtaaggttgcctgtgtatttggtgaatcttactgaagattggtagcaagaagaagt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttctgtaaggttgcctgtgtatttggtgaatcttactgaagattggtagcaagaagaagt 605
Query: 413 agcttattacaggatgtggtgc-------ttcaaagtaaacagctcttcattctataaaa 465
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 606 agcttattacaggatgtggtgcatagagcttcaaaataaacagctcttcattctataaaa 665
Query: 466 aa--tgatgaacttcaatttccattactcaggtattcctgaagcaattgccctgtggatc 523
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 666 aaaatgatgaacttcaatttccattactcaggtattcctgaaacaattgccctgtggatc 725
Query: 524 ctctttgtatataccaaattcccaggcccagctttcctcatctgccctctttgttgt 580
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctctttgtatatacaaaattcccaggcccagctttcctcatctgccctctttgttgt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 982
Length adjustment: 10
Effective length of query: 570
Effective length of database: 972
Effective search space: 554040
Effective search space used: 554040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
