BAC Information

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BAC

Clone NameMSMg01-298D11
Chromosome2 (Build37)
Map Location 87,506,062 - 87,506,585
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134
Downstream geneOlfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298D11.T7 (MSMg01no298_d11.b1)MSMg01-298D11.TJ (MSMg01no298_d11.g1)
ACCAG425331AG425332
length732807
length of high quality
(start - end)		525 (57 - 581)126 (50 - 175)
definitionCHROMAT_FILE: MSMg01no298_d11.b1 PHD_FILE: MSMg01no298_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:51 2005CHROMAT_FILE: MSMg01no298_d11.g1 PHD_FILE: MSMg01no298_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTA
TGCCAGTAGGGACCTTCATTATATTCAGGTTAGTAAGACAGACTCTGAAA
ATTTGACCAAAGTTCAACAGGTACAATACTGGGGACTTTGGAAATAGAAC
AGGCCTGGATAGAGATTGCTACTAGGGCACTGTCAGACATTGGAAGGGAG
TAGATATCCTTTAGACCTATGAAGGCTTCTTTTACATGGAACTGCCAAAT
GCACTGGGAATTTTGTGGTTGGAGGAGAAATAGAAATGAAAATATAAAGA
TCATCTTGTTAGGAGTAGGAGGTGGGATGGAATGGTTATTCTAAGGAAGC
AAGGACTTATGTGAGAAGATGAGAATGTGGGTTTGGCCAAAAGAATGGTA
TGGGAACAGGGTAAAATAAAGGGTGTGAGATAGAATATGTGGACCCTAAA
TGGTGTTTCTCTGAGTCTAGTTGCTGTTGTAGAAGTGAACACCATGATAT
AAAGACCCTGCCAGTTTCACTTTAAAGTAGCTTGGAAGAGGCCAAGAGAA
TATTATCTCCAGGTTGTAGAGGGCAAGCACCACACAGTGGCCTGAGGTGA
AGGCAGCTGAATTGTTCCCAGATGACCGATTGAATGGTTCATAAGAGAGA
GGATAAGTTTGTCCCGCAAATAGACGCCCGACAAGAGCGATAGAAGTTTC
CCTAACCTTATCTCAAAAGACTAAAGAGGATA

TGGCGGCCGCCAGTCCGTAGCGTTTAGGTGACCTATATATGTCACGCAGA
ATTCCAGGATAGTGGGGTGTGCGGGGATGGGGGTGGGGCTATAGGCTCCA
CCCTATCTTTCAAAAGACCAAACAAACAAATGAACAAAAACAAGCAAACT
AAAATACAAATGGAAGCCGGACGTGGTGCCACACACCTTTAATCCCATCT
CTCATGATGCAGAGGCAGGTATATTTTTGACCTCGAGGCCAGTCTACACA
CTGTTCCCCAGAACTTCCCCCGCTACACCTACAAACCCTGTTTCTTTTGT
TTACACCGCAACAAATCCCCCCCCGCGCTATTTTTTCACCCACTTATCCA
CATTCTTTGTTTTTTAAATACTCCCGACTTCTTTATTTCATTTCCTCCCT
ATTTGTCTATCCTCCCCCCCTTTTTTCTTCCCCCCCCCCTTTTATTTCAC
TTTTTTTTCCTACACTGCCATTGCGCTTTTTCATCTCAGTTTTTATATAC
CACTAAAACCGTTTTTACACCTCATTTTTCTTCCCTCAATTATTATTCAC
CCCCTTCGACTATTTCTCTCCATTATCTACTTTTTTACATCCTATCTTCT
TTTCCCTCCCCCTTTTACCTTTTTTCCCACCACTTCCCACTTCTTTTTTT
TTTTTCTCCTTCCTCCCCTATTTCCCCCTTCCTTCCTACTCTTCTCTTTT
TTTCTATTTTTTTTTCTCTTTTCCTCGTCTTTATATTTTCACCCCACCTC
TTTTCCCTCCCCTCCCCTTGTTATCACATTACCTCTTTCTCATTCTTACC
TTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_d11.b1 MSMg01no298_d11.b1 CHROMAT_FILE:
MSMg01no298_d11.b1 PHD_FILE: MSMg01no298_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:51 2005
         (525 letters)



>mm_chr2_87505862_87506785
          Length = 924

 Score =  984 bits (509), Expect = 0.0
 Identities = 521/525 (99%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggaccttcattatattcaggttagtaagacagactctgaaaatttgaccaaagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tagggaccttcattatattcaggttagtaagacagactctgaaaatttgaccaaagttca 665

                                                                       
Query: 61  acaggtacaatactggggactttggaaatagaacaggcctggatagagattgctactagg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 acaggtacaatactgggggctttggaaatagaacaggcctggatagagattgctactagg 605

                                                                       
Query: 121 gcactgtcagacattggaagggagtagatatcctttagacctatgaaggcttcttttaca 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 604 gcactgtcagacattggaagggagtaga-atcctttagacctatgaaggcttcttttaca 546

                                                                       
Query: 181 tggaactgccaaatgcactgggaattttgtggttggaggagaaatagaaatgaaaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tggaactgccaaatgcactgggaattttgtggttggaggagaaatagaaatgaaaatata 486

                                                                       
Query: 241 aagatcatcttgttaggagtaggaggtgggatggaatggttattctaaggaagcaaggac 300
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 485 aagatcatcttgttaggagtaggatgtgggatggaatggttattctaaggaagcaaggcc 426

                                                                       
Query: 301 ttatgtgagaagatgagaatgtgggtttggccaaaagaatggtatgggaacagggtaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttatgtgagaagatgagaatgtgggtttggccaaaagaatggtatgggaacagggtaaaa 366

                                                                       
Query: 361 taaagggtgtgagatagaatatgtggaccctaaatggtgtttctctgagtctagttgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taaagggtgtgagatagaatatgtggaccctaaatggtgtttctctgagtctagttgctg 306

                                                                       
Query: 421 ttgtagaagtgaacaccatgatataaagaccctgccagtttcactttaaagtagcttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgtagaagtgaacaccatgatataaagaccctgccagtttcactttaaagtagcttgga 246

                                                        
Query: 481 agaggccaagagaatattatctccaggttgtagagggcaagcacc 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaggccaagagaatattatctccaggttgtagagggcaagcacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space:   470710
Effective search space used:   470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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