BAC Information

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BAC

Clone NameMSMg01-298F09
Chromosome2 (Build37)
Map Location 39,652,275 - 39,652,653
singlet/doubletsinglet
Overlap genenone
Upstream geneNr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F09.T7 (MSMg01no298_f09.b1)MSMg01-298F09.TJ (MSMg01no298_f09.g1)
ACCAG425415AG425416
length714728
length of high quality
(start - end)
238 (46 - 283)379 (54 - 432)
definitionCHROMAT_FILE: MSMg01no298_f09.b1 PHD_FILE: MSMg01no298_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:00 2005CHROMAT_FILE: MSMg01no298_f09.g1 PHD_FILE: MSMg01no298_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCCTTTTCGGAGCGGAGCCGCGGAATTCTTCCTTGCAAATATGATCCC
CTTGATCTCCTTTTGTTGTCAAATTGCTCTGGCTAGGACTTCACATACTA
TGTTGAATAGGTAGGGAGAAAGTGGACAGCCTTGTCTAGTCCCTGATTTT
AGTGGGATTGCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTACTGG
TTTGCTGTAGATTGCTTTTATCATGTTTACGTATGGGCCTTGAATTTCTG
ATCTTTCCAAGACTTTTTATCATGAATGGGTGTTGGATTTTTTCTAATGC
TTTCTCAGGATCTAACAACATTATCATGTGGTTTTTGTCTTTGAGCTTGT
TTATATAGTGGATTATGTCGATGGATTTTCATATATTAAATCATCCCTGC
ATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTG
CTCTTGGATTTGGTTAGTGAGAATTTTATTGAGTATTTTTGCATCGATAT
TCATAAGGGATATCGGTCTGAAGCTCTCTATCTTTGATGGGTCTTCTCTC
TGGTTTAGGTATCACACCCCTTATGGCCTCTTAGAATGAATCGTTCCACA
TCACCTTCTGCTTCCATTTTGCGGTATACTTTGCGAACCATTGGGACTAC
ATTTTCTTCCACCGTTTGCATAATTTCTGTACTATTTCCCCCTGATTCTG
TGCATTTTTTTGCT
TGGAGGCCGCCGGTTCATCACCAGGGTAGGTGACACTATAGATTGACACA
AAGAATTCTTACAATATATTGCTACATATCTATAGGAACAAAATAGTTGC
CAAACATAATAATGACAGGGAAACAAAGTAGTTGTTTAAAAAGTAGAAAT
GTTATAATTATGTATATTCATGTATATTTAGCAGGCAAATCTAATCTATT
GTGCTAAAGTTCAGACTAATGACATTCTTTAAGGGGTTTATATGATAGGA
AAGGGATTTGGGAGTGTTCTAGAAGGCAAAAACATATACTCAGTCTTGAC
CTGTTTTATATTTCAGTGGTCTTATGCAAATCTACCTTCTAGTATGATAT
TTTGATATATTGTAAATTAAAACGGAAAAGATGCACCCCCTCTCTCTTTC
TTTCTCTTTCTCCTTACCACTATTTATAATGTAAGTGTGCATGTGATACC
TGGTATATAAAGCTGTTTGGAGCTAATAGTGATGAAATAAAGTTCTTAGG
TCGACAAAATACAGTAGGTTGTTGGATGCACAATACATGACTGTCACCTT
ATGGCTTCTTAGAAATGGGAACATAACACCTATACAACGAGTTACAGATA
CAAAATTTGGAGCCTAGATGAAAGGATGGACCATCTAGTGACTTGCCATA
TGCTTGGATCCATCCCATAATCTGCTTCCCCATGCTGACACCCTTGCCAT
ACACTATCTAGATTTCGCTGAAAGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f09.g1 MSMg01no298_f09.g1 CHROMAT_FILE:
MSMg01no298_f09.g1 PHD_FILE: MSMg01no298_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:00 2005
         (379 letters)



>mm_chr2_39652075_39652853
          Length = 779

 Score =  679 bits (351), Expect = 0.0
 Identities = 372/379 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcttacaatatattgctacatatctataggaacaaaatagttgccaaacataataat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 579 aattcttacaatatattgctacatatctataggaacaatatagttgccaaagataataat 520

                                                                       
Query: 61  gacagggaaacaaagtagttgtttaaaaagtagaaatgttataattatgtatattcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gacagggaaacaaagtagttgtttaaaaagtagaaatgttataattatgtatattcatgt 460

                                                                       
Query: 121 atatttagcaggcaaatctaatctattgtgctaaagttcagactaatgacattctttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atatttagcaggcaaatctaatctattgtgctaaagttcagactaatgacattctttaag 400

                                                                       
Query: 181 gggtttatatgataggaaagggatttgggagtgttctagaaggcaaaaacatatactcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gggtttatatgataggaaagggatttgggagtgttctagaaggcaaaaacatatactcag 340

                                                                       
Query: 241 tcttgacctgttttatatttcagtggtcttatgcaaatctaccttctagtatgatatttt 300
           ||||||||||  |||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 339 tcttgacctgggttatatttcagtggtcttgtgcaaatctaccttcttgtatgatatttt 280

                                                                       
Query: 301 gatatattgtaaattaaaacggaaaagatgcaccccctctctctttctttctctttctcc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gatatattgtaaattaaaatggaaaagatgcaccccctctctctttctttctctttctcc 220

                              
Query: 361 ttaccactatttataatgt 379
           |||||||||||||||||||
Sbjct: 219 ttaccactatttataatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)