BAC Information

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BAC

Clone NameMSMg01-298G12
Chromosome2 (Build37)
Map Location 36,904,736 - 36,905,213
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
Downstream geneOlfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298G12.T7 (MSMg01no298_g12.b1)MSMg01-298G12.TJ (MSMg01no298_g12.g1)
ACCAG425466AG425467
length727718
length of high quality
(start - end)
485 (46 - 530)549 (58 - 606)
definitionCHROMAT_FILE: MSMg01no298_g12.b1 PHD_FILE: MSMg01no298_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005CHROMAT_FILE: MSMg01no298_g12.g1 PHD_FILE: MSMg01no298_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCAAGTAGTCTCACTTCAGCTATCCATTCCATACAGGCTTTCATTCT
CGCTCATCCTGGGCAATCCCTCAATTAGGTTCCTTACTTATGTCATTGCC
TGTTAGCAAAACTTCCCCATTGATTGAAGTATCAAACCCTTAGATCTACT
ACAAGTATGGCAGAAGAGGTCACCACCATCTTGACCACCTCACTATTTTA
CCTACCGATTCTGCTAAGCATGTCACTTTGCACCCACCTCTTGTTCTCTC
TCAACTTGAGGATGACATGTCTCTTCCTTATTGGATGCTAAGGGTAAGCT
CCAGTACCTAGGACCCTAAGTGGCTTGCAGCACCCTCAGCTCCTCCTCTG
TGTCTATCTTCCTCTTTCCCTTAAACTTTCTCATCTGCTGTAACTAGTCT
ACCATATACTCGATCAGGTACCCACATTAGCTTCTTAACAGAGGCTTTCC
ATTTATGTGCCAGCTCTTCCTTCCCAACTTGGAATGGAGAAATGCATTTC
CTGATGTATCATCAATTTTCCACTAGTGATAGCTACCACTGGAAGGCTCA
GAATCTGGCCTTTTCTAAGATACCACAGACTTTAATTTCTCTCCTGTAGA
CTATTTTTTCCATACCACTGCGATGATATTCAACAGTTCCTTCAGACCCT
CTTCACCCCAGAGATATGGAACCACTN
CCTGGCGGCCGCCTTTTTCTCACGAGGAGGTGAACTATAGAAGTTACAAC
AAAAATCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTATCAAAAAAC
CAAAACACACACACACGCACACACACACACACACACACACACACACACAC
ACACACACACACACACAAAACCAACCACAGTGGTGGAAATAGGTCCACCC
CAGAGCACATCTATTCTACTGCAATAAACCCAAAATATTTCAACAGAGCT
GAGGCACAATAAAAAGACCTTAAATCCAAATTTATAAAGAGGTTAGAGAT
GCTTATTTTTTAAGCAAATAAATTGCTTAAAGGAAAATATAAGCTGAAAA
ATGAAGAATATTAATAAATCCTCTAAAGAAAAATCTAGAAAAAACCAAAC
AGTTGAAAGAAATGAATAAAATTAATGAAGACCTGAAGTAAAAATAAAGC
AATAAAGAAAACACAAAATGAGGGAATTCTGGTAAAAAGAAATCTATGTA
AACAAAGAGCAAGCAAATAGGAGCATGAGTAACAGAATACAAGAGATAAA
AGTGATAATCTTGGAAGAAGATATGGTAGAAGAAATAGATACATCAATCA
AAGACACTGTTAAATTTAAAATGTTCACTACAAAATTCCCCGTAAATCTA
GGACACTATGAATAGAAAAAACCTAATAATATTATGAATAGTTATAAGGA
AAAGATTTCCAGCTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_g12.b1 MSMg01no298_g12.b1 CHROMAT_FILE:
MSMg01no298_g12.b1 PHD_FILE: MSMg01no298_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:05 2005
         (485 letters)



>mm_chr2_36904532_36905413
          Length = 882

 Score =  870 bits (450), Expect = 0.0
 Identities = 473/482 (98%), Gaps = 5/482 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtagtc-tcacttcagctatccattccatacaggctttcattctcgctcatc 63
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaattcaagtagccat-acttcagctatccattccatacaggctttcattctcgctcatc 624

                                                                       
Query: 64  ctgggcaatccctcaattaggttccttacttatgtcattgcctgttagcaaaacttcccc 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 623 ctgggcaatccctcaattaggttccttacttatgtcattgcctgttagcaaaacctcccc 564

                                                                       
Query: 124 attgattgaagtatcaaacccttagatctactacaagtatggcagaagaggtcaccacca 183
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 563 attgattgaagtatcaaacccttagat---ctacaagtatggcagaagaggtcaccacca 507

                                                                       
Query: 184 tcttgaccacctcactattttacctaccgattctgctaagcatgtcactttgcacccacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 506 tcttgaccacctcactattttacctaccgattctgctaagcatgtcattttgcacccacc 447

                                                                       
Query: 244 tcttgttctctctcaacttgaggatgacatgtctcttccttattggatgctaagggtaag 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 tcttgttctctctcaacttgaggatgacatgtcacttccttattggatgctaagggtaag 387

                                                                       
Query: 304 ctccagtacctaggaccctaagtggcttgcagcaccctcagctcctcctctgtgtctatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctccagtacctaggaccctaagtggcttgcagcaccctcagctcctcctctgtgtctatc 327

                                                                       
Query: 364 ttcctctttcccttaaactttctcatctgctgtaactagtctaccatatactcgatcagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcctctttcccttaaactttctcatctgctgtaactagtctaccatatactcgatcagg 267

                                                                       
Query: 424 tacccacattagcttcttaacagaggctttccatttatgtgccagctcttccttcccaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacccacattagcttcttaacagaggctttccatttatgtgccagctcttccttcccaac 207

             
Query: 484 tt 485
           ||
Sbjct: 206 tt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 882
Length adjustment: 10
Effective length of query: 475
Effective length of database: 872
Effective search space:   414200
Effective search space used:   414200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)