BAC Information

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BAC

Clone NameMSMg01-299C08
Chromosome2 (Build37)
Map Location 62,113,317 - 62,113,771
singlet/doubletsinglet
Overlap geneSlc4a10
Upstream geneTank, Psmd14, Tbr1, LOC100039274
Downstream geneDpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299C08.T7 (MSMg01no299_c08.b1)MSMg01-299C08.TJ (MSMg01no299_c08.g1)
ACCAG426002AG426003
length776798
length of high quality
(start - end)
455 (73 - 527)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no299_c08.b1 PHD_FILE: MSMg01no299_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:59 2005CHROMAT_FILE: MSMg01no299_c08.g1 PHD_FILE: MSMg01no299_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATCCGCGGAAT
TCTCTTTTAATATTGAGCAGCGATATAATTTTCTGCCTTCTCACTGTCTT
TGACAAGAAAGTATAGAAGATAATTTTATTTAGGATGTATGGATTGACTT
TAGGTACAGTAAAGTAAAAGCTGACATTATACACAGAGAATAACTTGTTG
GCAGTCACTGTTAGGATGCATTAACATCTACAGAGCTCCCAGGGTCTCGG
GGGACACAGATGAAGATACAGCAGCTCTGTCCCTGAAACTGTCATAGCTT
ATTAGTGGGACAGCAAGGCTGAAACAGATCAATAATGGACTATATTTTTG
ATAGTAGTGTCCTGGAAACAACACTTTATCATTAGAATAAGTTAGGTCAA
TGTATGACTGAAACTAAACTCCAACTTCTCACCATATACAGATGACAGAA
TGAAGTAGATTAAAGACCTAAATATTTTAGGACCTAAACCCATGAAAGTT
CTAGTAGAAACCAGAGAAGTGTTTCAGGACACAGGAATGAGTGAAAGGTT
AGGGAGCGTGGCTCTAAAGCATAGGGAATACCAGCACAATGAGGAAACCC
CAAACCTCACGAAACAGTAGAGGGAAGACACAGCCAACACAACAGGACAG
TCCTTTGAAAATCCTATTTCCTGAACAGGTATTGATAACCCCAAAATAGA
AAGAGCTCCCTCCCCGGAGCCTAGTGGATGATTCAAAATAATCCTAATCC
CCTTTAGAAGCAAAACAACCCCTCTT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGAAAATCTTTATTTCTGTATTGACTGA
CTTTTTATTAAGTAGAGAGTTGTTCAGTTTTCATGAGTTTGTAATCTTTG
TGCTGTTTCTGTTACTGTTGATATCTAGCTTTAATTGGTGGTGGTCTGAT
ATGATGCAGGAAGTCATTTCAGTTTTTCTGTCTCTGTTGAGACTTGCTTT
GTCTCCATATGTAGTCATATTGGAGAAATCCCATGAGGTAGATAGAAAAG
GTATATTCTTTTCTGTTTGTTTTAAGTGTTCTGTACATATTTCGTAGATC
CATTTGGTTTATATTTGTTTGCCCCATTATTTTTCCTTTAATTTGTCGGG
GGATGAACCACCCATTTTTCAGAAGATGAATAATGAATTTTTCCTATAAT
CACCTGTGTGCAGGGTCCATCTTTTCAATTTAAGTGGAAAAGTGTCTTCT
TTACTCAAACTGGGTTGTCCCCGCTCGGGTCTCCTGCCCTCTTCCATCCT
TCACCTTCTTCCTCCCTTCCTCCCTCTCTCCCTCTCTACTCCCTCCTTCT
CTATCTCACCCATCATAATCTAGTATTTTATTATTACCTCCCCTCCCAAT
TCTCCATTTTATTTACACCTCAAACATCTAACATCCTTACTCTTCTATTC
TCTCTCCCTCTTCCCCTTCTCTCTCCTTCACATTCTCCTCTACTCTCTCT
TTATCTTCTCCTTCTTTTCCAATTATATTTCATATTTCATTCACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_c08.b1 MSMg01no299_c08.b1 CHROMAT_FILE:
MSMg01no299_c08.b1 PHD_FILE: MSMg01no299_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:59 2005
         (455 letters)



>mm_chr2_62113239_62114093
          Length = 855

 Score =  864 bits (447), Expect = 0.0
 Identities = 453/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataattttctgccttctcactgtctttgacaagaaagtatagaagataattttattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atataattttctgccttctcactgtctttgacaagaaagtatagaagataattttattta 474

                                                                       
Query: 61  ggatgtatggattgactttaggtacagtaaagtaaaagctgacattatacacagagaata 120
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 473 ggatttatggattgactttaggtacagtaaagtaaaagctgacagtatacacagagaata 414

                                                                       
Query: 121 acttgttggcagtcactgttaggatgcattaacatctacagagctcccagggtctcgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acttgttggcagtcactgttaggatgcattaacatctacagagctcccagggtctcgggg 354

                                                                       
Query: 181 gacacagatgaagatacagcagctctgtccctgaaactgtcatagcttattagtgggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gacacagatgaagatacagcagctctgtccctgaaactgtcatagcttattagtgggaca 294

                                                                       
Query: 241 gcaaggctgaaacagatcaataatggactatatttttgatagtagtgtcctggaaacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gcaaggctgaaacagatcaataatggactatatttttgatagtagtgtcctggaaacaac 234

                                                                       
Query: 301 actttatcattagaataagttaggtcaatgtatgactgaaactaaactccaacttctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 actttatcattagaataagttaggtcaatgtatgactgaaactaaactccaacttctcac 174

                                                                       
Query: 361 catatacagatgacagaatgaagtagattaaagacctaaatattttaggacctaaaccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 catatacagatgacagaatgaagtagattaaagacctaaatattttaggacctaaaccca 114

                                              
Query: 421 tgaaagttctagtagaaaccagagaagtgtttcag 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 113 tgaaagttctagtagaaaccagagaagtgtttcag 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)