BAC Information

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BAC

Clone NameMSMg01-299K06
Chromosome2 (Build37)
Map Location 127,298,843 - 127,299,183
singlet/doubletsinglet
Overlap geneKcnip3
Upstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a
Downstream geneProm2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299K06.T7 (MSMg01no299_k06.b1)MSMg01-299K06.TJ (MSMg01no299_k06.g1)
ACCAG426356AG426357
length789797
length of high quality
(start - end)
341 (75 - 415)220 (76 - 295)
definitionCHROMAT_FILE: MSMg01no299_k06.b1 PHD_FILE: MSMg01no299_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:37 2005CHROMAT_FILE: MSMg01no299_k06.g1 PHD_FILE: MSMg01no299_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTCTGAGATGTTCGCTTACGGGTTCAAGAGAGCAACATAGTTATGTGT
GTGCCCTTGACTTAAGATGGCTCCTTCTCTATTTGGTTTGAGGCCAAAAC
ATGCAGGAGGGACACATATAAAATTGTGAGGGAGGAAAGGGACCCCAGCC
TAGCCAGCCAGGTCAGCCTAATCAATGCTGCTGATCAGTAGGTGGCAGAC
AATGCAGCCAAATCACCCTCAAATTCAAGCTGGGATTCCTTATCAGTGAG
TGCATAAGCAGTACTGACCGGGGTCCTGCCCTGCCCCCGTGTGGCTCTCT
CTGTGTACCACCCACTTGTAGGGGCTTGGGAAATGTGGGTCTTGGATTCG
CTGCGTGGACAAACCCCACGGTCCAGGGAAGGGATTTTCTTGTTCTTAGC
TGAAGCCATCCCAGCCTCCTTGGACAGTTCCTGAGACCTTATAGCAACAG
CCCTGGAGACTCCTGCCACTTGTCTCAGTAGGAAAGAAGAACGAAACCAG
AGTAGAGCCTTCCTCAAACCTCCTCTTGAGTCATCAGAGGATCCCAAAGT
TACTTCTTTATAGGAAGCTCCAGAGGTGCTACCCTACCCCCTGGCTTCAA
TCTTTCCCATAGACCGTTGTGCCCTCCCTCCCCCGCGCCGGTGGAACCAC
GCCCCTCCCAAAGTTCCAAGACCCCTCCCCTCCCCCCCCCAAACACCGGG
GTCACGCCTGGGTCTCTCCCCCCCGTGTCACCTTTCTAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTGTAATTAAGAAATAAGATTCATGGGG
CTGGAGAAGTGGCTCAGCAGTTGAGAAAGAATATTGCTCTCACAGAGTTC
CACTTCCAGCATGGACATCCGGTGGGTCACAGCTGCCCGTAACCCCAGGT
CAAGGGGATCCAGCACCCTCTTCTGGCTTCCATGGGCACTGCACTCACAC
GCACACACTCACCTACAGAAACACAGATATTTCACCTTTACTTTCAATAA
ACTATTATTTTTTAAAGAACTAGGTTATAGGCCTTGAGGAGTATTTCCGT
GGTAGAGCATTTGTCTGGAATGTTCCAGGCCTTGGATTCCATCCCCAGAA
CTATGACTACTACTACCACTACTACTACTACTACTACTACTACTACTACT
ACTACTACTACTACTACTACTCCCACACCCACACACACTCACTCACACAC
TCAAATTTACACTTTTCCCACCAGACAGACATACATATACCCATCCAGAT
ATAGAGACCCTCCCTTCCCCTTTGCCTGTCCCTCTGCACGACACTCACCC
AGGCCTACTCCTTTTTGCCCTGTGCCTCCTCTCCCTTTACGCGGGCCCCC
CCTTCCTTGCTCCCTCCCTGCACACTCTCTTCCTCACCCTCCCCTCTTCC
CCCCTCTTCTCTCTCCATACACTACCACCCCTCTTCCTCAGAACCTTTTG
ACACCACTGCGTACCCCACTCTCCTCCACAAATCCTCACTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_k06.b1 MSMg01no299_k06.b1 CHROMAT_FILE:
MSMg01no299_k06.b1 PHD_FILE: MSMg01no299_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:37 2005
         (341 letters)



>mm_chr2_127298643_127299383
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaagagagcaacatagttatgtgtgtgcccttgacttaagatggctccttctctattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaagagagcaacatagttatgtgtgtgcccttgacttaagatggctccttctctattt 260

                                                                       
Query: 61  ggtttgaggccaaaacatgcaggagggacacatataaaattgtgagggaggaaagggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttgaggccaaaacatgcaggagggacacatataaaattgtgagggaggaaagggacc 320

                                                                       
Query: 121 ccagcctagccagccaggtcagcctaatcaatgctgctgatcagtaggtggcagacaatg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 321 ccagcctagccagccaggtcagcctaatcaatgctggtgatcagtaggtggcagacattg 380

                                                                       
Query: 181 cagccaaatcaccctcaaattcaagctgggattccttatcagtgagtgcataagcagtac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgccaaatcaccctcaaattcaagctgggattccttatcagtgagtgcataagcagtac 440

                                                                       
Query: 241 tgaccggggtcctgccctgcccccgtgtggctctctctgtgtaccacccacttgtagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccggggtcctgccctgcccccgtgtggctctctctgtgtaccacccacttgtagggg 500

                                                    
Query: 301 cttgggaaatgtgggtcttggattcgctgcgtggacaaacc 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgggaaatgtgggtcttggattcgctgcgtggacaaacc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)