BAC Information

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BAC

Clone NameMSMg01-299P09
Chromosome2 (Build37)
Map Location 34,217,206 - 34,217,873
singlet/doubletsinglet
Overlap genePbx3
Upstream geneRalgps1, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299P09.T7 (MSMg01no299_p09.b1)MSMg01-299P09.TJ (MSMg01no299_p09.g1)
ACCAG426585AG426586
length7671,032
length of high quality
(start - end)		673 (40 - 712)---
definitionCHROMAT_FILE: MSMg01no299_p09.b1 PHD_FILE: MSMg01no299_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:01 2005CHROMAT_FILE: MSMg01no299_p09.g1 PHD_FILE: MSMg01no299_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTTTTTTTTTTTAATACTGATTCTACGAAGAAATATGATAAGAAAAACTG
GAGGGTTTTCACTTATTTGAATAACAAGTGAAAACCCTAAAAATATCTTC
CCTGTATGTTATTACCAACTGTATCACTAGGTTTTATAGTGACAGCCCTG
TGCTATAATTTCTGAGAAAACCTCTACATAAAGCTCCATAAACCCAACCA
TTCCTATAATGTATCGCCTTATCTAGCACACAATCATTTCAAACACAACT
TTTCATGTTAGTATAATTTGTTCAAAAATGGTAATAAATACATCCATGAT
GCCAGAGAAATCATTGTACAATCTACTGCAACTTATTCTGAGCAGTAGTG
ACAGTTAATCCTACACCCAAGATCTGGTAGAAAAGAAAAACAAAATATTT
CAATTTTTCCTGATTTAATTAAAGATGTTCATTATACACATATCTTTTAA
TGGCCCAACACTCCCAATCGATATTATAAATAACCTGGACCAACTACAGA
GTAATGTCTGTGAACAATTATCACAAAACTAAAACATGGACTGCTGTCAG
TTGGCGGCAGAGTTCTTGCTTTCATAATAAATATAAAATCAATTTCCTGC
TCTAGTTCCTATTCCAAGTTGAAAATGATATATCTGACTATGAATTCCAA
CTACCTTCATGGGNTAGGTTTTTTTTTTTTTTCCTTTTTANNGGAGAGGT
GAGGAAAGCCAGAAAAA

GTGGGTTGGCCTGTGGGGGGCCTGCGTCGCCGATCCTCCCCGCGGCNCTG
CCGTTTTGATCCCGCGGCAATTGATTTGCTCAACTTCTCACTGACGCGTT
TTGCGTTGGTGGCTTCCCCCATCCTGTGGGACGGTCACCTCGGCAGTGCG
TTGTCGCTGAGCTCCAGTCGCGGACTTACTTTCGTGCTCGGGGGCGTCAA
ACATACTTCGCTCGATGTCGCTAACCCGGCGCCTTTTCTGCTTTCTAGAT
GACTAGCCTTCTTTCGTCCTTCTCTCCCCGTTCCTCCCCGATCTCTCTCC
ACACCCCCTGTNCACGCCTCCGTACGCCCCCGTCACGCACATGTCACTCT
GGCTGCGGTGGTTATCTACCGGAGGCGTAGAGCGCGGTTTTTTTTTTTTT
TTAACGGAAGCCCGGGGCCGGCGCGCGAAGAGGAGAGAAGAGATTTTTAA
AATTAAATTATTCCCCANAACAANGCCCCTCGTTTTTTTGTTTTGTTTGT
TTATAAGATATCCCGNCGCGGTGCCCCCCCTCTTTTAAAAAAAAATCTAC
CTATAAAAATATGTGGGGCCTCTGTCTCTGGGGTCAACCTTACCCCCAGC
ATCCCTCATCCCACCAGAACGCGCGACGCTATCCACCCGCCCTTGCGTCG
TTTCTTGCTCGCCCCTCCGTTGCCCGCATAGCTCGCATCCCCCATCTCGC
GTGGCCTTCACTCCCGCCCCCTGTGCCTTCTATCGCGCTTCCCGTTTGCT
ATTCCGTCTCCGCTCTCCACTATATCCATTCAGAATCTGAATTACTCTCA
CTTGCCCCCTGTTGGTCGTACTGTCGCTTGCTGCCTATTCCCATCCGGCC
CTTTGTTTCTTTGGCACCTCATTCGCCCTTCTATCTTCTGTTTCCGCCCC
ACTCCTACGTGCCGCTTCTTTATACGCTGCCCGCATTACGCTCTAACAAT
GTGTGTGTCTATTCGTCGCTATTCTATTTCTTTAGACACTCCTCATTCGA
TGTGCACTCGATTTCGTCAGCTCTCTTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_p09.b1 MSMg01no299_p09.b1 CHROMAT_FILE:
MSMg01no299_p09.b1 PHD_FILE: MSMg01no299_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:01 2005
         (673 letters)



>mm_chr2_34217002_34218073
          Length = 1072

 Score = 1270 bits (657), Expect = 0.0
 Identities = 666/669 (99%), Gaps = 1/669 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctttttttttttaatactgattctacgaagaaatatgataagaaaaactggag 64
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattccc-ttttttttttaatactgattctacaaagaaatatgataagaaaaactggag 263

                                                                       
Query: 65  ggttttcacttatttgaataacaagtgaaaaccctaaaaatatcttccctgtatgttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggttttcacttatttgaataacaagtgaaaaccctaaaaatatcttccctgtatgttatt 323

                                                                       
Query: 125 accaactgtatcactaggttttatagtgacagccctgtgctataatttctgagaaaacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accaactgtatcactaggttttatagtgacagccctgtgctataatttctgagaaaacct 383

                                                                       
Query: 185 ctacataaagctccataaacccaaccattcctataatgtatcgccttatctagcacacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctacataaagctccataaacccaaccattcctataatgtatcgccttatctagcacacaa 443

                                                                       
Query: 245 tcatttcaaacacaacttttcatgttagtataatttgttcaaaaatggtaataaatacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcatttcaaacacaacttttcatgttagtataatttgttcaaaaatggtaataaatacat 503

                                                                       
Query: 305 ccatgatgccagagaaatcattgtacaatctactgcaacttattctgagcagtagtgaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatgatgccagagaaatcattgtacaatctactgcaacttattctgagcagtagtgaca 563

                                                                       
Query: 365 gttaatcctacacccaagatctggtagaaaagaaaaacaaaatatttcaatttttcctga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttaatcctacacccaagatctggtagaaaagaaaaacaaaatatttcaatttttcctga 623

                                                                       
Query: 425 tttaattaaagatgttcattatacacatatcttttaatggcccaacactcccaatcgata 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 624 tttaattaaagatgttcattatacacatatcttttaatggctcaacactcccaatcgata 683

                                                                       
Query: 485 ttataaataacctggaccaactacagagtaatgtctgtgaacaattatcacaaaactaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttataaataacctggaccaactacagagtaatgtctgtgaacaattatcacaaaactaaa 743

                                                                       
Query: 545 acatggactgctgtcagttggcggcagagttcttgctttcataataaatataaaatcaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acatggactgctgtcagttggcggcagagttcttgctttcataataaatataaaatcaat 803

                                                                       
Query: 605 ttcctgctctagttcctattccaagttgaaaatgatatatctgactatgaattccaacta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttcctgctctagttcctattccaagttgaaaatgatatatctgactatgaattccaacta 863

                    
Query: 665 ccttcatgg 673
           |||||||||
Sbjct: 864 ccttcatgg 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space:   704106
Effective search space used:   704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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