Query= MSMg01no300_h04.b1 MSMg01no300_h04.b1 CHROMAT_FILE:
MSMg01no300_h04.b1 PHD_FILE: MSMg01no300_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:36 2005
(242 letters)
>mm_chr2_80048399_80049040
Length = 642
Score = 468 bits (242), Expect = e-136
Identities = 242/242 (100%)
Strand = Plus / Plus
Query: 1 cccccatggtggcacactacctccaacagggtcacacctattccaacaaggctgtgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccccatggtggcacactacctccaacagggtcacacctattccaacaaggctgtgcctc 260
Query: 61 ctaatagtgacactgcccatgggccaagcatattcaaaccaccacaaagagtaaaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatagtgacactgcccatgggccaagcatattcaaaccaccacaaagagtaaaataat 320
Query: 121 cttaaatacaagaaaaactgaaagcaacaacagattcaaataattaagaatacagataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaaatacaagaaaaactgaaagcaacaacagattcaaataattaagaatacagataat 380
Query: 181 acttttataaacactaggagaataaaataaactatgtaactggctagaaaatatctctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttttataaacactaggagaataaaataaactatgtaactggctagaaaatatctctaa 440
Query: 241 ta 242
||
Sbjct: 441 ta 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no300_h04.g1 MSMg01no300_h04.g1 CHROMAT_FILE:
MSMg01no300_h04.g1 PHD_FILE: MSMg01no300_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:36 2005
(287 letters)
>mm_chr2_80229532_80230218
Length = 687
Score = 497 bits (257), Expect = e-145
Identities = 278/285 (97%), Gaps = 2/285 (0%)
Strand = Plus / Minus
Query: 1 tgatctacaagagttgcgatcctggcagttgatagtcttctgagtacccggtttatctgc 60
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 484 tgatctacaagagttgcgatcctggcagtcgatagtcttctgagtaaatggtttatctgc 425
Query: 61 atgacatccagcttcctgccaaatgaaggtccagcaaatagttgagataagtacaggtcc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 424 atgacatccagcttcctgccaaatgaaggtccagcaaaaagttgagataagtacaggtcc 365
Query: 121 tgtgtaagattatctgctagagttaagatccgagagttactagtaaatcaggacaggtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgtgtaagattatctgctagagttaagatccgagagttactagtaaatcaggacaggtcc 305
Query: 181 cgtgcttcagaaggggctgcagtgaagtatactgctccaggtgatcagctag-gtacaag 239
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 304 cgtgcttcagaaggggctgcagtgaagtatactgctccaggtgatcagct-gtgtacaag 246
Query: 240 gaagactcctctcctaactggagctctctccctgatatattgcaa 284
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gaagactcctctcctaactggagctctctccctgatatattgcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
