BAC Information

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BAC

Clone NameMSMg01-301J10
Chromosome2 (Build37)
Map Location 91,114,956 - 91,115,523
singlet/doubletsinglet
Overlap geneZfp289
Upstream geneOlfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3
Downstream gene1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301J10.T7 (MSMg01no301_j10.b1)MSMg01-301J10.TJ (MSMg01no301_j10.g1)
ACCAG427741AG427742
length730723
length of high quality
(start - end)
568 (71 - 638)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no301_j10.b1 PHD_FILE: MSMg01no301_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:01 2005CHROMAT_FILE: MSMg01no301_j10.g1 PHD_FILE: MSMg01no301_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCATCACACTATCGGACAGCACAGCCATCTTGCCAGCCACAGACTTG
ACACCCTGCTTAAACTGGGCAATGTCAGCTGTAGGAAGTACATTCCCCAG
AGATACAGTTCCTGTAAAATTAAGGGAAGGGGTGGTCAGGAGCTCTGCAA
GAAGCCCTTCCCACCAACAGGGCACCCCAGCTGTGCTCATCTGATGCCAG
TGACAACACTGAGGCCCTACCTCCTCCATGAGCTCCATCCATGTCTCCAA
AAAGGTCTGAAGAGCTGATGGCACTGCTGCCCGAAAGCTGCTGTAACCGA
GACCTAGCTTCATACTGTGTGGGGAAAAGACAAGGCTGGGCGATCCTTGG
CCAGTGATAAAAGAACTCATTTATGCCAAATTAGGTTATCCCGATGCTAA
AGCCAAGAACAGAAAGGGAAGCTCCGGCTTCTACCTGCTGCCGCCACGTA
GACAACTTCACTAACCTCAGAATCCACCTCACGACCAAAGAACATGTCGG
ACGAGATGGCTTTGGCTCCTGCAAACTTCTGCCGTGCTTCACTGGACTCA
AGGCCTGAGCTCCGAGTCTCCACTTCCCTCCGACTCGCAGTTCTGTGGGC
AAGTGCAGAACACCTCTGTCCCTTCTCATTACCCCCAGAGAAAGTTCAGA
GACCACAAACTGTAGCCACTATGGTTTATC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGACCTCGCTGCTTCTGCTTCTG
GAGTGCTGGGATTAAAGGCATGTGCCATCATGCCTAGCTTGCCTTCATGT
TCTTTCCTCTATTTTCTGGTTGTTGAAGTTACAGATGTGCTAGCGCAGGC
TCTTTAGGGCCAGTATGAGTGTACGGGAATAAATGTTCTTCTTTTGTGCC
ATGTTCTATCCTAAGCACCCTCTGGGCATCAGATAGCTCATTTACCCCTT
CACAATGTATGGATAAAATGGGTATAAACTACTCACTCAGATGAGGAAAC
TGAGGCCCAGGAGTATGCAGCAGTAACATGCATCCGGGTTTGTCTGAAGC
TCCAAAGCATGCACTTTTTCTTCTGTGCCGCAGTCTCCTAGAGATGGGTC
CCGCTGCCAGACTCAGAAGATGTGGCACATGGACAGAGCCTTGGTAACAA
CCTTTTAACTGGGGAATCAGAGGCTCAGTGGAAAAAAAAGGTGTTTAGGC
TCATACAGCCCAGCACTGCTCAACAGGATGAGAAAGCTAGAGCCAGGCAT
GTAAGCCCAAACTTAGAAGTCTAAGTCGAGATGATCACATGTTCAAACTC
AGCCTGCGTGAGACCCTGCCTCAAAAAACAAGAATATGGATGAGTGAAGG
CCTCACTAGATGACGGTGCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_j10.b1 MSMg01no301_j10.b1 CHROMAT_FILE:
MSMg01no301_j10.b1 PHD_FILE: MSMg01no301_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:01 2005
         (568 letters)



>mm_chr2_91114756_91115723
          Length = 968

 Score = 1029 bits (532), Expect = 0.0
 Identities = 559/568 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacagccatcttgccagccacagacttgacaccctgcttaaactgggcaatgtcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 agcacagccatcttgccagccacagacttgacaccctgcttaaactgggcaatgtcagct 709

                                                                       
Query: 61  gtaggaagtacattccccagagatacagttcctgtaaaattaagggaaggggtggtcagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 708 gtaggaagtacattccccagagatacagttcctgtaaaattaagggaaggggtggtcaag 649

                                                                       
Query: 121 agctctgcaagaagcccttcccaccaacagggcaccccagctgtgctcatctgatgccag 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agctctgcaaaaagcccttcccaccaacagggcaccccagctgtgctcatctgatgccag 589

                                                                       
Query: 181 tgacaacactgaggccctacctcctccatgagctccatccatgtctccaaaaaggtctga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 tgacaacactgaggccctacctcctccatgagctccatccatgtttccaaaaaggtctga 529

                                                                       
Query: 241 agagctgatggcactgctgcccgaaagctgctgtaaccgagacctagcttcatactgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agagctgatggcactgctgcccgaaagctgctgtaaccgagacctagcttcatactgtgt 469

                                                                       
Query: 301 ggggaaaagacaaggctgggcgatccttggccagtgataaaagaactcatttatgccaaa 360
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 468 ggggaaacgacaaggctgggcgatccttggccagtgataaaagaactcatttatgccgga 409

                                                                       
Query: 361 ttaggttatcccgatgctaaagccaagaacagaaagggaagctccggcttctacctgctg 420
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 408 ttaggttatcccgatgctaaggccaagaacagaaagggaagccccggcttctacctgctg 349

                                                                       
Query: 421 ccgccacgtagacaacttcactaacctcagaatccacctcacgaccaaagaacatgtcgg 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ccgccacgcagacaacttcactaacctcagaatccacctcacgaccaaagaacatgtcgg 289

                                                                       
Query: 481 acgagatggctttggctcctgcaaacttctgccgtgcttcactggactcaaggcctgagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acgagatggctttggctcctgcaaacttctgccgtgcttcactggactcaaggcctgagc 229

                                       
Query: 541 tccgagtctccacttccctccgactcgc 568
           ||||||||||||||||||||||||||||
Sbjct: 228 tccgagtctccacttccctccgactcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)