BAC Information

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BAC

Clone NameMSMg01-301J15
Chromosome2 (Build37)
Map Location 156,849,960 - 156,907,403
singlet/doubletdoublet
Overlap gene9830001H06Rik
Upstream geneFer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1
Downstream geneGm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301J15.T7 (MSMg01no301_j15.b1)MSMg01-301J15.TJ (MSMg01no301_j15.g1)
ACCAG427750AG427751
length735747
length of high quality
(start - end)		315 (46 - 360)522 (77 - 598)
definitionCHROMAT_FILE: MSMg01no301_j15.b1 PHD_FILE: MSMg01no301_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:02 2005CHROMAT_FILE: MSMg01no301_j15.g1 PHD_FILE: MSMg01no301_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,907,094 - 156,907,403)(156,849,960 - 156,850,476)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTCTCTACTCCTCACTGGTGGTGGCTCCAGGCTGTCAGGGAAG
CTTCTGTAAGGTCCGGTAGCCCGTGGGGACTAGAGCTAGAGTTGGCTGGA
CGGACTTTACGGGACCACCCCATGAGACCTAACCGTACTTTTCATGTGGT
GACCGGATTCCACGGATGGAGAGAGGGAGCAACAGAGAAAGCTTGTGAGT
GAGGGCTTGCCAGATGCCATGCCATGCCATGCCACAGAGGTCTTCTGCCC
AGGCTGGAGGGCAGGAAGCAGACCCTGAGGCTGTTGGCAGTGCCAGGGTG
GCTATGAGATTAGTAGTGATCCGCCCCCCCCCAGCAACTCCTAAAAGTTG
TCCTCTGACCTTTTATGTGCACTGAGAAATGAGTGCACTTGTGTGTGTGT
GTGTGTATGCACTACTACTACTACTACTACTACTACTACTACTACTACTA
CTACTACAATTGGAATATATGTCATGTGCTTCTTTTTGGAGAATGCAACC
AGACATAAATTCCTTAATCCTGCTGGGCGGTGGTGGCGCAAGCCTTTAAT
CCCAGCACTCGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCGAGGCCTGT
CTGGACTACTGAGTGAGTTTCAGGACAGTCAGGGCTATCCTGAGAATCCC
TGTCTCGTATATCTAAAATAAGTTCCTTATTCCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGGGCCCATTTGCATGTGCTC
ATCAGCTCAATTAGTCCTCATAGCAGACATAGGAGCCAGTACAACTGAGA
TTATTTCCAAGTAGCAGGTGAGAGGATAAAGTCAACAGAAGGAGGGCCCA
GATGTGGAGCAGTTCAGACAGCAGCTGAGATGACGGGCGCCGCATCACCA
CTTCGCTCCCACAGGGGACGACTCACCCTAGTGTCCCCGTCCCCCGCCCC
CCAGCTTCCCCAGTGTTAGTAAGGCTCACCCCCCCCCCCAAACCTTTCAG
TTCTGAAAAAGCAAGTAGGCTTTGCCTTCCATTCCCCAGAGGTGCAATGA
AGTCCTAAGCAACACCAGGGCAGGCTGGCTACCTGTTTGCACCTGAACCC
CCATCTCAAGCTCTGCTTACTTGGAACCCAATGTAAGACAAACAGAATGG
GGGTGGGAGGGCAGCAACAAAAGTCACCTCAGCATGAATGAACAGCAATC
ACAGATGAAGATGTAAGCCAAGGCCCAGTGGGGGGGAAGGGGGGGGGTAT
TTNNTTTTTTTGTTTTTTTTTTTTTTTGTTTGCTTTTGTTTGCGTTTGTT
GGTTTTGGGTGTTGTTTTTTGGGTTTTGTGCCGTGTTGTTTTTGGGTCTT
TTTTTTATTTTTAATATCTTCTTCATTTTAATTATCTTTTCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_j15.b1 MSMg01no301_j15.b1 CHROMAT_FILE:
MSMg01no301_j15.b1 PHD_FILE: MSMg01no301_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:02 2005
         (315 letters)



>mm_chr2_156906986_156907700
          Length = 715

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttctctactcctcactggtggtggctccaggctgtcagggaagcttctgtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaattcacttctctactcctcactggtggtggctccaggctgtcagggaagcttctgtaa 359

                                                                       
Query: 65  ggtccggtagcccgtggggactagagctagagttggctggacggactttacgggaccacc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggtccggtagccagtggggactagagctagagttggctggacggactttacgggaccacc 299

                                                                       
Query: 125 ccatgagacctaaccgtacttttcatgtggtgaccggattccacggatggagagagggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccatgagacctaaccgtacttttcatgtggtgaccggattccacggatggagagagggag 239

                                                                       
Query: 185 caacagagaaagcttgtgagtgagggcttgccagatgccatgccatgccatgccacagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 caacagagaaagcttgtgagtgagggcttgccagatgccatgccatgccatgccacagag 179

                                                                       
Query: 245 gtcttctgcccaggctggagggcaggaagcagaccctgaggctgttggcagtgccagggt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 178 gtcttctgcccaggctggagggcaggaagcagaccctgaggctgttggcagtgccaggat 119

                     
Query: 305 ggctatgaga 314
           ||||||||||
Sbjct: 118 ggctatgaga 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_j15.g1 MSMg01no301_j15.g1 CHROMAT_FILE:
MSMg01no301_j15.g1 PHD_FILE: MSMg01no301_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:02 2005
         (522 letters)



>mm_chr2_156849760_156850678
          Length = 919

 Score =  909 bits (470), Expect = 0.0
 Identities = 508/522 (97%), Gaps = 7/522 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggggcccatttgcatgtgctcatcagctcaattagtcctcatagcagacataggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggggcccatttgcatgtgctcatcagctcaattagtcctcatagcagacataggagc 260

                                                                       
Query: 61  cagtacaactgagattatttccaagtagcaggtgagaggataaagtcaacagaaggaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtacaactgagattatttccaagtagcaggtgagaggataaagtcaacagaaggaggg 320

                                                                       
Query: 121 cccagatgtggagcagttcagacagcagctgagatgacgggcgccgcatcaccacttcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagatgtggagcagttcagacagcagctgagatgacgggcgccgcatcaccacttcgc 380

                                                                       
Query: 181 tcccacaggggacgactcaccctagtgtccccgtcccccg-ccccccagcttccccagtg 239
           |||||||||||||||||| ||||||| |||||  |||||| |||||||||||||||||||
Sbjct: 381 tcccacaggggacgactcgccctagt-tccccaccccccgcccccccagcttccccagtg 439

                                                                       
Query: 240 ttagtaaggctcacccccccccccaaa-cctttcagttctgaaaaagcaagtaggctttg 298
           |||||||||||  |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 ttagtaaggct--ccccccaccccaaaccctttcagttctgaaaaagcaagtaggctttg 497

                                                                       
Query: 299 ccttccattccccagaggtgcaatgaagtcctaagcaacaccagggcaggctggctacct 358
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 498 ccttccatttcccagaggtgcaatgaagtcctaagcaacaccaggacaggctggctacct 557

                                                                       
Query: 359 gtttgcacctgaacccccatctcaagctctgcttacttggaacccaatgtaagacaaaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtttgcacctgaacccccatctcaagctctgcttacttggaacccaatgtaagacaaaca 617

                                                                       
Query: 419 gaatgggggtgggagggcagcaacaaaagtcacctcagcatgaatgaacagcaatcacag 478
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 618 gaatgggggtgggagggcagcaacaaaagtcatctcagcatgaatgaacagcaatcacag 677

                                                     
Query: 479 atgaagatgtaagccaaggcccagtgggggggaagggggggg 520
           |||||||||||||||||||||||||||||||  |||||||||
Sbjct: 678 atgaagatgtaagccaaggcccagtgggggg--agggggggg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 919
Length adjustment: 10
Effective length of query: 512
Effective length of database: 909
Effective search space:   465408
Effective search space used:   465408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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