BAC Information

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BAC

Clone NameMSMg01-302A12
Chromosome2 (Build37)
Map Location 43,633,330 - 43,708,056
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302A12.T7 (MSMg01no302_a12.b1)MSMg01-302A12.TJ (MSMg01no302_a12.g1)
ACCAG428046AG428047
length734728
length of high quality
(start - end)
320 (44 - 363)297 (72 - 368)
definitionCHROMAT_FILE: MSMg01no302_a12.b1 PHD_FILE: MSMg01no302_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:34 2005CHROMAT_FILE: MSMg01no302_a12.g1 PHD_FILE: MSMg01no302_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,633,330 - 43,633,646)(43,707,760 - 43,708,056)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGAACAACTTTCCTATAAACAACTTTGCAGTTATGCCTGAAATAC
AATCAAGTACATTATTATTAGTACTACAATATTAGATTGAGTATTATTTG
GAGTGCACAGGTATCCATTTTATAACATGAGCATGGAACCATCCCTGCAT
CTAATCAATGTATTGAATATCCATTTCACTCCCACCTGTCCTCCTATTCG
GTTTAAGCATTTCTTTCTTCACTCTCTTCTTTCTCCTTAAGCAATTGCAG
TTTGGGTTTCTTTCCCATGGTGGTTTTTACTTTTATAGGACACTGTAGAA
ATAAGATAGCAGATTTTACTTTCTTCCTCCCTCTGAGACAGGGTCTTGTT
ATATTGCCCAGGCTGACCCAAAACTCATCACGCTCCTGCTTCAGCTTCCT
GACTGCTGGAATTCCAGATGAGTGAGACTCAGCCATCTAGTATGCTTCAA
GTTGTTCCATTTTTATTTTGGACTGGTGTCATTCATTTGACAGAATGAGT
TTTTGATTCTTCGTCTTGTTGTTCATGAATAGTTTGCTCCATTTTAGAAA
GGTTTAAGTATGTATATGCATATACGTCTGTAGATGGGTACATACCAGTG
CAAGTTTCCTTGGAGAACAGAGGTTTTGGATTCCCCTAGATATGAAATTA
AAAGCTGCTATGATCAGTCAAATATTACTGGTGT
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCCTCTTAGTAGCTCTTCAAGGTGAAT
GAGGTGTCAGTATAACTGAGGAGAAAAATGAAGCTTACTGAGACTGTGTC
CTACCTAATAAGGGCACACAGTCATGTGGGAGAGATTTAGGGGTTTACCT
CTGAAGCCCACCTCCGGTCTGAAGGATCAGCTGTTCTGGAGCAGGACCAT
GCACCTTTCTCTTATGCATGCTCTGTGCTGAGCTTCATGGCAGGAGTTAG
AAGGAGAGAACACAGTCTTGTAAAAGCATTAGACCTCTTTCTCCTAGAAG
CAGAGCTGTCTTTTTTGGCGACCCCCGCCTTCTGTACCACTTTCTGCAGT
CTGTGTGTGTTCCCACACCAGTGGGGAACAGCTAAAGCTTCCGTCTTCAT
AATAACATTGGGCACATAGAACAATGTTAACCCTCCCATGAAGGAGGGTT
CTTTCTTGAACTTCCTACCATTCTTCCTTCCTTCCTTCTTCCATTCTTCC
CTTCCTTCCTTCTTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTCCT
TTCTTCCTTCCTTCCCTTCTTCCTTCCTTCCTTCTTCCCTTCTTCCCTTC
TTCCCTTCTTCCCTTCTTCCCTTCTTCCCTTCCTTCCTTCTTTCCTTCCT
TCCTTTCCTCCTTCCTTCCTTCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_a12.b1 MSMg01no302_a12.b1 CHROMAT_FILE:
MSMg01no302_a12.b1 PHD_FILE: MSMg01no302_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:34 2005
         (320 letters)



>mm_chr2_43633127_43633846
          Length = 720

 Score =  528 bits (273), Expect = e-154
 Identities = 306/317 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgaacaactttcctataaacaactttgcagttatgcctgaaatacaatcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgaacaactttcctataaacaactttgcagttatgcctgaaatacaatcaa 263

                                                                       
Query: 64  gtacattattattagtactacaatattagattgagtattatttggagtgcacaggtatcc 123
           ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtatattattattagtattacagtattagattgagtattatttggagtgcacaggtatcc 323

                                                                       
Query: 124 attttataacatgagcatggaaccatccctgcatctaatcaatgtattgaatatccattt 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 324 attttataacatgagcatggaaccatccctgcatctaatcaatgtgttgaatatccactt 383

                                                                       
Query: 184 cactcccacctgtcctcctattcggtttaagcatttctttcttcactctcttctttctcc 243
           |||||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||
Sbjct: 384 cactcccacctgtccttctattctgtttaagcatttcttgctccactctcttctttctcc 443

                                                                       
Query: 244 ttaagcaattgcagtttgggtttctttcccatggtggtttttacttttataggacactgt 303
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 444 ttaagcaattgcagtttgggtttctttcccgtggtggtttttacttttttaggacactgt 503

                            
Query: 304 agaaataagatagcaga 320
           |||||||||||||||||
Sbjct: 504 agaaataagatagcaga 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no302_a12.g1 MSMg01no302_a12.g1 CHROMAT_FILE:
MSMg01no302_a12.g1 PHD_FILE: MSMg01no302_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:34 2005
         (297 letters)



>mm_chr2_43707560_43708256
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctcttagtagctcttcaaggtgaatgaggtgtcagtataactgaggagaaaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attcctcttagtagctcttcaaggtgaatgaggtgtcagtataactgaggagaaaaatga 438

                                                                       
Query: 61  agcttactgagactgtgtcctacctaataagggcacacagtcatgtgggagagatttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcttactgagactgtgtcctacctaataagggcacacagtcatgtgggagagatttagg 378

                                                                       
Query: 121 ggtttacctctgaagcccacctccggtctgaaggatcagctgttctggagcaggaccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtttacctctgaagcccacctccggtctgaaggatcagctgttctggagcaggaccatg 318

                                                                       
Query: 181 cacctttctcttatgcatgctctgtgctgagcttcatggcaggagttagaaggagagaac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacctttctcttatgcatgctctctgctgagcttcatggcaggagttagaaggagagaac 258

                                                                    
Query: 241 acagtcttgtaaaagcattagacctctttctcctagaagcagagctgtcttttttgg 297
           ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 acagtcttggaaaagcattagacctctttctcctagaagcagagctgccttttttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)