BAC Information

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BAC

Clone NameMSMg01-302A21
Chromosome2 (Build37)
Map Location 172,952,611 - 173,129,247
singlet/doubletdoublet
Overlap genePck1, Zbp1, Tmepai
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302A21.T7 (MSMg01no302_a21.b1)MSMg01-302A21.TJ (MSMg01no302_a21.g1)
ACCAG428064AG428065
length714718
length of high quality
(start - end)
318 (43 - 360)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no302_a21.b1 PHD_FILE: MSMg01no302_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:36 2005CHROMAT_FILE: MSMg01no302_a21.g1 PHD_FILE: MSMg01no302_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,128,934 - 173,129,247)(172,952,611 - 172,952,893)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACCTGCATTACATTTTTAAACATGGCCACTGGAAATGTTTGAATGAA
AATGTATCTAGGGCCATTTTATAGACGAAGACACTGAAGGCACAGAGAGT
GGATCAGGACAGGAGGCAGCTCCAGGGGTCACCACAGTTACACTTTGCAG
TTCCTAGGCCTGTGCGGAGAGCTTCCAATTGCTGGTCGTGGTGGGGTGCA
TTGGAACCTTGCCTCCCTGGTGGAGCCTGCACAGCTGGAGTTCGGGCCCC
ACCCCTTTCCCACAGCCCAGCCCCTTTCTCTCAGTCCCACCCCTCTCCCC
GACCCCACTCTTTCTGCAGCCTCCGCCCCAGGATCCTGTCTCTGAAAAGG
GGACTCTCTGCTGGGGGCATTTGTACTTTGCCTTGCCTTTCGATTTACCT
CAACTACTCTTTGTATGTTCTAGAACACTCCATCCACTTTCTAGTAGATT
CTGCATTCTTTCCTTGGGCAAAGCAGTCTAATTAGGAAGAGTCTGCAATG
GGTGGGAATATTATTAAGGCACTTAGAGGTTCTTAACACCTTCCATGAGC
ACACTGTCGCCTGTCGCGCCTAATCACCTTACCGCCATTAGAGTTGCATT
AGCAGCCAGACCGAGATTTTGCACTGTGAAAGATCAGTACGTTGAGAAAA
CTCATAGACTACAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCTCTTGTGCAGGACACATTCAGGGAT
AAAGGGTTGAGGGACAATGCTCTCTCTGACAGCAAATAGCTTTCTGTCCG
GCTTGCTCTTATGAGAGCTTGCCAGGAAGCTGGGAAGAAAAGAAAGAACG
AGCGGACAGCAGCCAGGAAACTGGAAGAGCAGGAGGAAGGGAAGAGGCTT
TGGAACCTGGCTCTGCGCTGCTGAGCTTGGCCACAGCTCTCAAGGAGAGG
GAGAGAGGTGGCTTACTTCATCTGGCCTCAATGTGATTGCCCCAGATTAG
GAAACTGTTTTTATTTACCCNNTCGNNGCCCCGAGGGGGACGATGATCGA
TGATCGGTCCCTGACACCTGTACACAATAGAAAAACAGAGGAGGCGGGCG
GGGAGATGTGGCTCATTTGGTAAAGCAACTTTACTTAGCTTGCACAGACC
CCTGGCTCCCATTGCTAGCTAGCACTGTGTAAGCTAGATGTGGTAGGCAG
TACACAGCTCTGATCCCAGCACTCATGAGGTGGAGACAGGAGGGTCTGAA
GTTCCAGGTCATTTCCTGGTACCTAGTGAGCTCCAGGCCAGCCTGGCCTA
CTTGATGCCCTGCCTCAAGAAAAGACCGCGACCGAAACCGATTTCGCCTA
TAAATTCGCCTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_a21.b1 MSMg01no302_a21.b1 CHROMAT_FILE:
MSMg01no302_a21.b1 PHD_FILE: MSMg01no302_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:36 2005
         (318 letters)



>mm_chr2_173128627_173129344
          Length = 718

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacctgcattacatttttaaacatggccactggaaatgtttgaatgaaaatgta 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 gaattccacctgcattacatttttaaacatgggcactggaaatgtttgaatgaaaatgta 562

                                                                       
Query: 65  tctagggccattttatagacgaagacactgaaggcacagagagtggatcaggacaggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctagggccattttatagacgaagacactgaaggcacagagagtggatcaggacaggagg 502

                                                                       
Query: 125 cagctccaggggtcaccacagttacactttgcagttcctaggcctgtgcggagagcttcc 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctccagggatcaccacagttacactttgcagttcctaggcctgtgcggagagcttcc 442

                                                                       
Query: 185 aattgctggtcgtggtggggtgcattggaaccttgcctccctggtggagcctgcacagct 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aattgctggtcgtggtggggtgcattggaaccttgcctctctggtggagcctgcacagct 382

                                                                       
Query: 245 ggagttcgggccccacccctttcccacagcccagcccctttctctcagtcccacccctct 304
           |||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||
Sbjct: 381 ggagttcgggccccacccctttcatacagccccgcccctttctcacagtcccacccctct 322

                         
Query: 305 ccccgaccccactc 318
           ||||||||||||||
Sbjct: 321 ccccgaccccactc 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no302_a21.g1 MSMg01no302_a21.g1 CHROMAT_FILE:
MSMg01no302_a21.g1 PHD_FILE: MSMg01no302_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:36 2005
         (288 letters)



>mm_chr2_172952411_172953098
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctcttgtgcaggacacattcagggataaagggttgagggacaatgctctctctgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctcttgtgcaggacacattcagggataaagggttgagggacaatgctctctctgacag 260

                                                                       
Query: 61  caaatagctttctgtccggcttgctcttatgagagcttgccaggaagctgggaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatagctttctgtccggcttgctcttatgagagcttgccaggaagctgggaagaaaag 320

                                                                       
Query: 121 aaagaacgagcggacagcagccaggaaactggaagagcaggaggaagggaagaggctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaacgagcggacagcagccaggaaactggaagagcaggaggaagggaagaggctttg 380

                                                                       
Query: 181 gaacctggctctgcgctgctgagcttggccacagctctcaaggagagggagagaggtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacctggctctgcgctgctgagcttggccacagctctcaaggagagggagagaggtggc 440

                                                      
Query: 241 ttacttcatctggcctcaatgtgattgccccagattaggaaac 283
           |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 441 ttacttcagctggcctcagtgtgattgccccagattaggaaac 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)