Query= MSMg01no302_j10.b1 MSMg01no302_j10.b1 CHROMAT_FILE:
MSMg01no302_j10.b1 PHD_FILE: MSMg01no302_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:15 2005
(512 letters)
>mm_chr2_143580357_143581270
Length = 914
Score = 917 bits (474), Expect = 0.0
Identities = 501/510 (98%), Gaps = 2/510 (0%)
Strand = Plus / Minus
Query: 5 gaattc-cagcatcccctctgcc-cataaatatcagcaatggcagggatgacatttcagt 62
|||||| |||||||| ||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 714 gaattcacagcatcctctctgccacataaatatcaccaattgcagggatgacatttcagt 655
Query: 63 ggcaagtacctgtcaaagacatgctatgcaagaggggtttttatggacaacagcacagta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggcaagtacctgtcaaagacatgctatgcaagaggggtttttatggacaacagcacagta 595
Query: 123 atggagttcagatccatggcatatgaccggatagtctcttaaagctgagtgaggtgagag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atggagttcagatccatggcatatgaccggatagtctcttaaagctgagtgaggtgagag 535
Query: 183 agtactgaccaaacatgtgctgcgaaccttgtgagtagcaggcagctctaaaaacagaca 242
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 534 agtactgaccaaacgtgtgctgcaaaccttgtgagtagcaggcagctctaaaaacagaca 475
Query: 243 gctgtcaaggccactcaacaatgtgcccgataaggtaggctacccttccagcaatcagct 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 474 gctgtcaaggccactcaacaatgtgcccgaaaaggtaggctacccttccagcaatcagct 415
Query: 303 aatcagtgttgactgaatgccagccaggaaaagaaccactgtaagatcccgaggcctccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aatcagtgttgactgaatgccagccaggaaaagaaccactgtaagatcccgaggcctccc 355
Query: 363 agcaaatcaattatatctgctgtgcacattattggtgcctgttaaatatgtaatatttcc 422
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 354 agcaaatcaattatatctgctgcgcacattattggtgcctgttaaatatgtaatatttcc 295
Query: 423 ttcctttcctgtaatttggattatcattttgttgggccaaaatgtcattctctgattgca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttcctttcctgtaatttggattatcattttgttgggccaaaatgtcattctctgattgca 235
Query: 483 agctaggagaaaattatactttgcgaaatt 512
||||||||||||||||||||||||||||||
Sbjct: 234 agctaggagaaaattatactttgcgaaatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space: 453808
Effective search space used: 453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_j10.g1 MSMg01no302_j10.g1 CHROMAT_FILE:
MSMg01no302_j10.g1 PHD_FILE: MSMg01no302_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:15 2005
(235 letters)
>mm_chr2_143399188_143399822
Length = 635
Score = 439 bits (227), Expect = e-128
Identities = 233/235 (99%)
Strand = Plus / Plus
Query: 1 cttgtatattttgatatgagaaatggatcattaacagaactacagacactctgctcctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtatattttgatatgagaaatggatcattaacagaactacagacactctgctcctgt 260
Query: 61 tttgtgcatagtaaataaccataggccatatgtatatggatgcaggagaaaacacaggtg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttgcatagtaaataaccataggccatatgtatatggatgcaggagaaaacacaggtg 320
Query: 121 ctttgctgcctagtcttgaactactacatcaagactgcaggttgcctgggagcatgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgctgcctagtcttgaactactacatcaagactgcaggttgcctgggagcatgattt 380
Query: 181 agcttgtaatggatgtaaagacacacagttgtttactgtgttgtttatggaaggt 235
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttgtaatggatggaaagacacacagttgtttactgtgttgtttatggaaggt 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
