BAC Information

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BAC

Clone NameMSMg01-302K05
Chromosome2 (Build37)
Map Location 88,261,163 - 88,261,451
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180
Downstream geneOlfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302K05.T7 (MSMg01no302_k05.b1)MSMg01-302K05.TJ (MSMg01no302_k05.g1)
ACCAG428470AG428471
length796733
length of high quality
(start - end)		345 (41 - 385)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no302_k05.b1 PHD_FILE: MSMg01no302_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:19 2005CHROMAT_FILE: MSMg01no302_k05.g1 PHD_FILE: MSMg01no302_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGCACCTGACTAAGGTACCACCTCCCATAGCCCCCACAAGAGAAGCATG
GTCAGTAGTCACTGGTAGCAATGGCCCAAGCTTCTGACCTTCAGGATAAA
CTCCTCCCCAGTTACCTAACATCAGTGAAGACCATAATAAGGGGTGCTCA
GCTCTCACCTCCCTCTCTTATTCCTTTGTCCTCTCACCTCTCCACCTCTC
TCTTCTCTCACTTCTCTCTCCTCTTCCCTTTCTCCTCCTCCTCCTCCTCC
TCCTCTTCCCTTTCTCCTCCTCCTCCTCCTCCTCCTGCTCCTCCTCCTCC
TCCTCCTTTTTTTTTTCTCCCCCCCCCCCCCCTTCTTATTCTTATTCTTC
TTATGTCTCTTCTTCTTCAACAAAAAAAAAAAAATCTTCTTGGGGGGGCG
GGCTTTTCTTCATCCTCCCAAGCCCCCAGCTCAAGGTTTAGATTCTTTCT
CCGTTATCTTCTTACTATTTCGGCGTCTTTCACCTTTCTCTTCATTTTCC
ATTCTAATATTATCTTAATCAATATTATAAATTCTAATATTAAAATTTTT
TCATGTCCCCTACCCCTTTCGTCTTAGTATTTTAACCTCATTTAATTTTA
ATTCGCTTTAATACTTGCCTACCTATCTCAAGCCTTTTTTCTCTTTTATA
TTAAGCATGCCATGAAGATATGACGGTATTAAATGTGATCCACGAACTTT
AAGATAGAAGTGGAAAAAAGACAAGGACGTTTATGTTTCTCTTTGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGAAAATAGATATAAAATGGCTATCAAT
CATGAACTGTATATATCTCTGTATGTTGTTAGGCAAGTAAGTGACCCCCA
CTAAAACTGAAGCAAACAGGTTTTAGGGGGAAAGAGTGAGCCTAGAAAAG
CACATAAATAAATGAAAGTAGAAAGTAAAATATAGAGAAGATAAGCTATA
ATGAAACAAGTAATTTGGGACAAATGAAGGCAATGGAATATATGTAAACT
AAAAACAAACAATTTAAAAGAAAGGAACCAGCTACTACTATTATTATGCT
AAGGAAACATTTNATATTTTCCNTCCACCCCCATAATTACTCATTTGGTA
AAACAGTGTATCGCCCAGCCCTAAACAAAAAAGCTTCCTCTTATAGCGGA
TGGCAATTAAAATAGAGACCTACAACTGAAGAATTGCAGAGTGAGAGACT
TTGGAACACTCAGCATTAAATGGAATGTGTTTATTAAACTGCTCCCCGTA
AGGCTCAGCATCTGTCCTGAAGAAGAAACAGAAAAGTTTTAAGAGCCAGA
GATGGTAAATGATGCTAAGAAAAATCACCATTCAGAAACAATAGAGCTGA
TACACAACTGAAGTCACAGAGAGTATGAGAGCAAGTCACCACATATACAT
GTTCAATTTGGACTAAATCCCCTATTGGTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_k05.g1 MSMg01no302_k05.g1 CHROMAT_FILE:
MSMg01no302_k05.g1 PHD_FILE: MSMg01no302_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:19 2005
         (289 letters)



>mm_chr2_88260963_88261651
          Length = 689

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaaaatagatataaaatggctatcaatcatgaactgtatatatctctgtatgttgtt 60
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tctgaaaatagatatagaatggctatcaatcatgaaatgtatatatctctgtatgttgtt 260

                                                                       
Query: 61  aggcaagtaagtgacccccactaaaactgaagcaaacaggttttagggggaaagagtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaagtaagtgacccccactaaaactgaagcaaacaggttttagggggaaagagtgag 320

                                                                       
Query: 121 cctagaaaagcacataaataaatgaaagtagaaagtaaaatatagagaagataagctata 180
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaaaagcacataaatatatgaaattagaaagtaaaatatagagaagataagctata 380

                                                                       
Query: 181 atgaaacaagtaatttgggacaaatgaaggcaatggaatatatgtaaactaaaaacaaac 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 381 atgaaacaagtaatttgggacaaatgaaggcaatggaatacatgtaaactaaaaacagac 440

                                                            
Query: 241 aatttaaaagaaaggaaccagctactactattattatgctaaggaaaca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttaaaagaaaggaaccagctactactattattatgctaaggaaaca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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