Query= MSMg01no303_g02.b1 MSMg01no303_g02.b1 CHROMAT_FILE:
MSMg01no303_g02.b1 PHD_FILE: MSMg01no303_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:17 2005
(689 letters)
>mm_chr2_13173988_13175076
Length = 1089
Score = 1029 bits (532), Expect = 0.0
Identities = 629/690 (91%), Gaps = 46/690 (6%)
Strand = Plus / Plus
Query: 5 gaattcaaggcttgtacacacataaagtggcaatgagcttgaagtggtcagaaattctgt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggcttgtaaacacataaagtggcaatgagcttgaagtggtcagaaattctgt 264
Query: 65 cactggtcaaacttggcctttattggtcccccagtgttgctgtgattctgttcacagtaa 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactgatcaaacttggcctttattggtcccccagtgttgctgtgattctgttcacagtaa 324
Query: 125 ctgggctttagccatcagttcatctgggagactgtgtgctatggcaaaaacatcagttca 184
||||||||||||||||||||||||||||||
Sbjct: 325 ctgggctttagccatcagttcatctgggag------------------------------ 354
Query: 185 tctgggaggcactgttatcatcagaatacaaatggcttactgggtcctggtgccttttgt 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 355 --------gcactgttatcatcagaatacaaatggcttactgggtcctggtgccttctgt 406
Query: 245 ggtatataacatggaatctgataggccaactgcacatgcccttggatattcaacatggct 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggtacataacatggaatctgataggccaactgcacatgcccttggatattcaacatggct 466
Query: 305 accttgttttacaataaggaacactgttcaaagactgaatgattctactatgaacagcaa 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 accttgttttacaataagggacactgttcaaagactgaatgattctactatgaacagcaa 526
Query: 365 taatcatttatagataaacacagaaactatcatgttaatacaaatacaaccaaagttgta 424
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 527 taaacatttatagataaacacagagactatcatgttaatacaaatacaaccaaagttgta 586
Query: 425 aactattaaagaactgctttgaactttgcataaaagactatcccaatagccttttccatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aactattaaagaactgctttgaactttgcataaaagactatcccaatagccttttccatt 646
Query: 485 ttggtacccagtgagtcagaaattgttacagacttaagcagcttgaattcaatgatgcca 544
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 647 ttggtacccagtgagttagaaattgttacagacttaagcaccttgaattcaatgatacca 706
Query: 545 caagactgtgg-------ctggatgtcaacaccaatgctgaccaacttgaggtttgcatc 597
||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 707 caagactgtgggtactggctggttgtcaacaccaatgctgaccaacttgaggtttgcatc 766
Query: 598 tctac-gatgtgagattaaaatgctatcatttaaccacaggtgaagttatttcaaccctc 656
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 767 tctaatgatgtgagattaaaatgctatcatttaaccacagctgaagttatttcaaccctc 826
Query: 657 gtggtagaatacagatccagccattcttaa 686
||||||||||||||||| |||| |||||||
Sbjct: 827 gtggtagaatacagatctagcccttcttaa 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_g02.g1 MSMg01no303_g02.g1 CHROMAT_FILE:
MSMg01no303_g02.g1 PHD_FILE: MSMg01no303_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:17 2005
(294 letters)
>mm_chr2_13268404_13269097
Length = 694
Score = 545 bits (282), Expect = e-160
Identities = 291/294 (98%)
Strand = Plus / Minus
Query: 1 cagactgtgctaaatttttgatacaatgaaaatagtcattgatatttgtccctatagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 494 cagactgtgctaaatttttgatacaatgaaaatagtcattgatatttgtacctatagctt 435
Query: 61 taagatacaagtgaaagaccaaaaagtatccaaggcaggtaatgtatccatttctcatta 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 taagatacaagtgaaagaccaaaaagtatccaaggcaggtaatatatccatttctcatta 375
Query: 121 tcccgagaatctgtggatagaatagatagaactgagaatgttgtagtgtttctatacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcccgagaatctgtggatagaatagatagaactgagaatgttgtagtgtttctatacaat 315
Query: 181 gaaaaaggggcatgaatgagactatactatataggtacaattgcccttcacactctgtat 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 314 gaaaaaggggcatgaatgagactatacaatataggtacaattgcccttcacactctgtat 255
Query: 241 gggttaagtacaaaagggcaccaggaaggccacatcctccatatcagtgtttct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gggttaagtacaaaagggcaccaggaaggccacatcctccatatcagtgtttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
