BAC Information

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BAC

Clone NameMSMg01-303J17
Chromosome2 (Build37)
Map Location 115,783,515 - 115,883,908
singlet/doubletdoublet
Overlap geneMrg1
Upstream geneLOC100043232, LOC100043236, BC052040
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5, LOC100043557, LOC241621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303J17.T7 (MSMg01no303_j17.b1)MSMg01-303J17.TJ (MSMg01no303_j17.g1)
ACCAG429153AG429154
length732731
length of high quality
(start - end)		691 (42 - 732)662 (70 - 731)
definitionCHROMAT_FILE: MSMg01no303_j17.b1 PHD_FILE: MSMg01no303_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:33 2005CHROMAT_FILE: MSMg01no303_j17.g1 PHD_FILE: MSMg01no303_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,783,515 - 115,784,201)(115,883,247 - 115,883,908)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTGCCTCTCTCTTTTCTGTGAACTGGTGGCATGTAATACCGTTCTCCA
TCTCCACCTCATGAAAGCATGGCACTTTCCCTTCATATTAAAATATGGTA
CTTAACATCTGAGAATGTCAACACCGCATTAGGCACTTTGTGAGAACAAC
ATTAGGCATACTTCCTGCTCAGGGGATTTGTTTACCAAACATCAGGCTAA
AGTAGAAAGCTGTACCATTCCCCTACATGGAGTGCTCTGTACAGAGATAA
CTTCTATTAGGTCTGCAACAAAATCACCAAGATTTTTTATTCTTATTTTT
AGGGCAAATGCAAAGGAATACCCTTTAATTTAACACAAACTTTTAGAAGT
TTGGTTTGGGCACATTCCACATCTTATTCTGTTATCCTGGGATAGAGCCA
GTGACTACATTTAAATTAAACATATTCAATGTGGGTTTTGCCATAAAGCA
AGAAAGACGCCATTTTGTGAACTCTGACTTTACTTACATTCTTGTAAGCA
GGGCATTTAGCAGAGAGCTTATTTCTTGCATGCCATGCCATAGTTTGCAC
CATTTAAACAAGGCAGTGGGAGAAACATTCTGAAGAAAATGAACATAAAC
TGCTCCAGACAGGGCTTGTTTTTGCCATGTAAAAATTTTTACATGCTGTG
GGCTAGTACACTTTGTGGGTGTTGGAGACATA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGGCAATTTTGTCTTGCATTGACAATAAAA
GGAGTGAATGAACACATTACAAGTCTCGGGACTTTTTGCTCATAGAAACT
TATTGTCAGAATATGGTCTTATTGCCAAGTGCCTGAAGCATCTCTATAAT
AAAAGACAGCAACCTTGATGAACCAATTTTTTACACTGTATTACAAGAGC
TGAAGGGAATGAAGGCTGAGTTACCGTAGGTTAGTGTTTGAGCTTTAACA
CTTTAACAGTTGGTGGCTGAGGATGGAGAGTGTGGAAGATACCCGTGGAT
GTCAAGCCAGGAAAGGAGATTTCTATTCTCTGTTCTTATTCTTATTTTGG
AACTGATCTACTGAATCTGATGGGGTGGAGGGAAGCATATGTAGTGATAC
TCGAAATCTGTAGAAGAAGCAAAGAGAAGAAAGATTGCAGCTGGCAGGGA
TGAAGGGGAAGGCAAGGGTGCTGAGGTTAAAGAGTGGGTGTGAATAGCAC
TGTATTTTGGGGAACTCAAGCCGGGAAGTGGGGGACAGGGTATCTATGCA
TTCATTTGAACTCACAACCTAAACGACATAGGCCAGTGTCTGGGTAATTT
CATGGCTTAAATATTAATTTAACACCCCAATAGAAGTTAAACAGGCATTG
AGGTTTGAAGGCAGTTTGCATTACCCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_j17.b1 MSMg01no303_j17.b1 CHROMAT_FILE:
MSMg01no303_j17.b1 PHD_FILE: MSMg01no303_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:33 2005
         (691 letters)



>mm_chr2_115783311_115784401
          Length = 1091

 Score = 1297 bits (671), Expect = 0.0
 Identities = 683/687 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgcctctctcttttctgtgaactggtggcatgtaataccgttctccatctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgcctctctcttttctgtgaactggtggcatgtaataccgttctccatctcc 264

                                                                       
Query: 65  acctcatgaaagcatggcactttcccttcatattaaaatatggtacttaacatctgagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctcatgaaagcatggcactttcccttcatattaaaatatggtacttaacatctgagaa 324

                                                                       
Query: 125 tgtcaacaccgcattaggcactttgtgagaacaacattaggcatacttcctgctcagggg 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 tgtcaacaccgcattaggcactttgtgagaacaacattagccatacttcctgctcagggg 384

                                                                       
Query: 185 atttgtttaccaaacatcaggctaaagtagaaagctgtaccattcccctacatggagtgc 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttgtttaccaagcatcaggctaaagtagaaagctgtaccattcccctacatggagtgc 444

                                                                       
Query: 245 tctgtacagagataacttctattaggtctgcaacaaaatcaccaagattttttattctta 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatacagagataacttctattaggtctgcaacaaaatcaccaagattttttattctta 504

                                                                       
Query: 305 tttttagggcaaatgcaaaggaataccctttaatttaacacaaacttttagaagtttggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttagggcaaatgcaaaggaataccctttaatttaacacaaacttttagaagtttggt 564

                                                                       
Query: 365 ttgggcacattccacatcttattctgttatcctgggatagagccagtgactacatttaaa 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgggcatattccacatcttattctgttatcctgggatagagccagtgactacatttaaa 624

                                                                       
Query: 425 ttaaacatattcaatgtgggttttgccataaagcaagaaagacgccattttgtgaactct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaaacatattcaatgtgggttttgccataaagcaagaaagacgccattttgtgaactct 684

                                                                       
Query: 485 gactttacttacattcttgtaagcagggcatttagcagagagcttatttcttgcatgcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gactttacttacattcttgtaagcagggcatttagcagagagcttatttcttgcatgcca 744

                                                                       
Query: 545 tgccatagtttgcaccatttaaacaaggcagtgggagaaacattctgaagaaaatgaaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgccatagtttgcaccatttaaacaaggcagtgggagaaacattctgaagaaaatgaaca 804

                                                                       
Query: 605 taaactgctccagacagggcttgtttttgccatgtaaaaatttttacatgctgtgggcta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taaactgctccagacagggcttgtttttgccatgtaaaaatttttacatgctgtgggcta 864

                                      
Query: 665 gtacactttgtgggtgttggagacata 691
           |||||||||||||||||||||||||||
Sbjct: 865 gtacactttgtgggtgttggagacata 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_j17.g1 MSMg01no303_j17.g1 CHROMAT_FILE:
MSMg01no303_j17.g1 PHD_FILE: MSMg01no303_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:34 2005
         (662 letters)



>mm_chr2_115883047_115884108
          Length = 1062

 Score = 1272 bits (658), Expect = 0.0
 Identities = 661/662 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcaattttgtcttgcattgacaataaaaggagtgaatgaacacattacaagtctcgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 862 ctggcaattttgtcttgcattgacaataaaaggagtgaatgaacacattacaagtctcag 803

                                                                       
Query: 61  gactttttgctcatagaaacttattgtcagaatatggtcttattgccaagtgcctgaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gactttttgctcatagaaacttattgtcagaatatggtcttattgccaagtgcctgaagc 743

                                                                       
Query: 121 atctctataataaaagacagcaaccttgatgaaccaattttttacactgtattacaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atctctataataaaagacagcaaccttgatgaaccaattttttacactgtattacaagag 683

                                                                       
Query: 181 ctgaagggaatgaaggctgagttaccgtaggttagtgtttgagctttaacactttaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctgaagggaatgaaggctgagttaccgtaggttagtgtttgagctttaacactttaacag 623

                                                                       
Query: 241 ttggtggctgaggatggagagtgtggaagatacccgtggatgtcaagccaggaaaggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttggtggctgaggatggagagtgtggaagatacccgtggatgtcaagccaggaaaggaga 563

                                                                       
Query: 301 tttctattctctgttcttattcttattttggaactgatctactgaatctgatggggtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttctattctctgttcttattcttattttggaactgatctactgaatctgatggggtgga 503

                                                                       
Query: 361 gggaagcatatgtagtgatactcgaaatctgtagaagaagcaaagagaagaaagattgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gggaagcatatgtagtgatactcgaaatctgtagaagaagcaaagagaagaaagattgca 443

                                                                       
Query: 421 gctggcagggatgaaggggaaggcaagggtgctgaggttaaagagtgggtgtgaatagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctggcagggatgaaggggaaggcaagggtgctgaggttaaagagtgggtgtgaatagca 383

                                                                       
Query: 481 ctgtattttggggaactcaagccgggaagtgggggacagggtatctatgcattcatttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgtattttggggaactcaagccgggaagtgggggacagggtatctatgcattcatttga 323

                                                                       
Query: 541 actcacaacctaaacgacataggccagtgtctgggtaatttcatggcttaaatattaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actcacaacctaaacgacataggccagtgtctgggtaatttcatggcttaaatattaatt 263

                                                                       
Query: 601 taacaccccaatagaagttaaacaggcattgaggtttgaaggcagtttgcattaccctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taacaccccaatagaagttaaacaggcattgaggtttgaaggcagtttgcattaccctcc 203

             
Query: 661 ct 662
           ||
Sbjct: 202 ct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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