Query= MSMg01no304_e07.b1 MSMg01no304_e07.b1 CHROMAT_FILE:
MSMg01no304_e07.b1 PHD_FILE: MSMg01no304_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:40 2005
(661 letters)
>mm_chr2_180631319_180632379
Length = 1061
Score = 1178 bits (609), Expect = 0.0
Identities = 648/665 (97%), Gaps = 8/665 (1%)
Strand = Plus / Plus
Query: 1 ccagtcacagcacttcacgtggaagcatcca----ccatacccacactgcttgccctgaa 56
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 201 ccagtcacagcacttcacgtggaagcatccaggagc----cccgcactgcttgccctgaa 256
Query: 57 gtctgtgctctggtagtctctacccgaggctccagcctctctgcgcctcatcgccccaac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtctgtgctctggtagtctctacccgaggctccagcctctctgcgcctcatcgccccaac 316
Query: 117 cttcactcctgatgcagcgggtgggggcagagatgtttcagagggaaaattaagatgcta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttcactcctgatgcagcgggtgggggcagagatgtttcagagggaaaattaagatgcta 376
Query: 177 gagtgctcctgccatagcttgttagagagacagaagaaaacgtgggaagaacttcaattg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagtgctcctgccatagcttgttagagagacagaagaaaacgtgggaagaacttcaattg 436
Query: 237 gcaggagggagcgaagagggtctgattctgcatggcggccccatccaagaggaagcaaga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaggagggagcgaagagggtctgattctgcatggcggccccatccaagaggaagcaaga 496
Query: 297 caggtatcagcttctctagtgcacacacacttatctcctcccagcctcaggctatgccca 356
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 caggtatcagcttctctagtgcacacacacagatctcctcccagcctcaggctatgccca 556
Query: 357 gtccacatggcacacaagttctactttccacaatagagcttcattggcagcacctcccag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtccacatggcacacaagttctactttccacaatagagcttcattggcagcacctcccag 616
Query: 417 ggctgtgatcaaaaagtcatgggagtccagattgcaggggcctctaccttagcccatgcc 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggtgtgatcaaaaagtcatgggagtccagattgcaggggcctctaccttagcccatgcc 676
Query: 477 tgtccacttgtaccctaaactctacaggattccgcctttacccaacacaggttcccggac 536
|| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 677 tgcccactcgtaccctaaattctacaggattctgcctttacccaacacaggttcccggac 736
Query: 537 ctttgttaccaacagaggtctaggctgctcctcagcatcagcttgaccagaagggtaaac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctttgttaccaacagaggtctaggctgctcctcagcatcagcttgaccagaagggtaaac 796
Query: 597 cagtatccccatggctacctgcgacctcctagttggtcacatgagcaggtctaggcttcc 656
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 797 cagtatccccatggctacctgcgacctcctagttggtcacatgagcaggcctaggcttcc 856
Query: 657 ttgga 661
|||||
Sbjct: 857 ttgga 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_e07.g1 MSMg01no304_e07.g1 CHROMAT_FILE:
MSMg01no304_e07.g1 PHD_FILE: MSMg01no304_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:41 2005
(701 letters)
>mm_chr2_180796356_180797456
Length = 1101
Score = 719 bits (372), Expect = 0.0
Identities = 378/380 (99%)
Strand = Plus / Minus
Query: 322 ttatattctcttttatgtgtcattattaatcgcgtctttgctgtccatgcttactagtct 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ttatattctcttttatgtgtcattattaatcgcgtctttgctgtccatgcttactagtct 1012
Query: 382 tctcttttgccaagcctcttacttcattctctagaaacatctggatcttttctctattct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 tctcttttgccaagcctcttacttcattctctagaaacatctggatcttttctctattct 952
Query: 442 ctccatctctatctaacttattcaaaaagttaaatatagctacaataacttataaataag 501
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 951 ctccatctctatctaacttattcaaaaagttaaatatagctacaataacctataaataag 892
Query: 502 tctgtcaaatccaataggaaggcaagctttggtcagcttcaattgtttggttttgttttg 561
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tctgccaaatccaataggaaggcaagctttggtcagcttcaattgtttggttttgttttg 832
Query: 562 gttcgtttactttgtttctctcaatgcctagaaatccagtttaatgttatacattgtgaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gttcgtttactttgtttctctcaatgcctagaaatccagtttaatgttatacattgtgaa 772
Query: 622 cttgatccacagtgattcctttggtaggaatatttttgcatcgctgtgattttgacactt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cttgatccacagtgattcctttggtaggaatatttttgcatcgctgtgattttgacactt 712
Query: 682 gctatcgggcgatgctgtgt 701
||||||||||||||||||||
Sbjct: 711 gctatcgggcgatgctgtgt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
