BAC Information

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BAC

Clone NameMSMg01-304E13
Chromosome2 (Build37)
Map Location 136,728,476 - 136,728,784
singlet/doubletsinglet
Overlap gene2210009G21Rik
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks
Downstream geneJag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304E13.T7 (MSMg01no304_e13.b1)MSMg01-304E13.TJ (MSMg01no304_e13.g1)
ACCAG429618AG429619
length1,3051,347
length of high quality
(start - end)
304 (491 - 794)749 (82 - 830)
definitionCHROMAT_FILE: MSMg01no304_e13.b1 PHD_FILE: MSMg01no304_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:43 2005CHROMAT_FILE: MSMg01no304_e13.g1 PHD_FILE: MSMg01no304_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAGGCCTTTNNNNNNNCCAATGGGCGCTNXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATCCAAAATATACAATCATCTAAGATAANANNNAA
NAAAANANAANCAAAAANCAAACCTTTAAAAAGGGNAAAGGACTNAAANA
TTCCNTCAAAGAAGATTTTTAAATTGTCAATAAACACATGTGAACCCGCA
CCTACCACCATTAGCTATTAAAGAAATACAAATTAAAATTATACTAAAAT
GCCACTCACTTCATATCCTCACAGATGGCTAAAATTGAAACAGAAACAAC
ACTATGTGTTTACAAGATGTAAGCTGGAATTCTCATGCACTCCCTTTGGG
AACATAAAATATTTAACAATGCTTTTTTTTTTTTTTGTAGGTCTGATGAC
ATACCAGAGACAATTTTTTTTATTAANNGGAACAAAAAACACAAAGGAGT
TNCACAGCAACACCCTTCCAAATAACCAAAACACAGAGAAAAACCAAGNA
NCAACTGAAGNGNGGATTGTGGTATATTTTTTGTCATTAAAAGGAAAAAT
AATCCCTTTTATCAAATCAAATGATCTCTAGAAAATTACAAGCATGTAGG
TAACTCTACTAAAGACACACAGAGAGAAAATAGGGGATGCTTACAAGCTG
AGACTTTCTTTTTCTTTCTTTTTTTTTAAATAATTCTGTCTATTTTTACT
AGCTATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCC
CCTCCAAAAATCCCCTATCATCTACCCCCTCCCCCTGCTCCCCAATTTTT
TTACTCCTGCTTCCTGGCCCTGGCATTCCCCTATACTAGGGCATAAAGCC
TTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACTGACTAGGCCATCC
TTTGCTACATATGTAGCTGGAGCCCTGAGTCCCCACATGTGTTTTCTTTG
ATGGGGGTTTTAATCCAGGGAACTTCCGGGGGACTGGGTGGGCCCCACTG
TTGGTCCCCCCAAAGGGGTGGAAAACCCTCTGCTCCTTGGGGGCCTTTTC
TAAGCCCCCCCAAGGGGGAACCTGGGGCCGGCCCACGGGGGGGGGGGGGA
AACCCCCTCCTGGAATTGTGAAAACAAATAAAAAACGCCCCGCGTAGAAC
ATTATATAAGTGCCCCGCGAGAGGGAAATTCTAAGTAACATCGCTCGCCT
CTCCCTAGAGAGTGCACGAGAAAGACCCCTTTCTGAATATAATGGGGTGA
ACCCAGGTCTTCNTAACCACACTACCTATCTTATATGTAGCACACACAAT
AACAT
NNNCCCTTTTTTTTNNNNATCAAGTGATGCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAATCCACTTCCCCC
TCTATCTAGTTTGAACTTGGGCACTGTTATGTGTGTGTTGACACGGTCCC
TGCCACAGTGAATTTGCATTTGCATCACTCCTGTTGTGTCTGGAAGGCAC
TGTTTCTATGAAGTTATCCATCTCCTCTGGCTCTTGCACTCTTTCTGCCT
CTTCTTTCACACAAATCCCTGAGACTTTGGGGGAGGGGTTTGACGAACAC
TCCATTTAGAGCTGAATATTCTAAAGTCTCTCACTCTCTGCACATTTCCC
AGTGATTGGTCCCATCTACTGAAAGAAGAAGTGTCTTTGAAATTCGCTAA
GTGAGGTTCTGATCAGCATGCATAACAACATGCAGTTAGGAGTTATTTTA
TTGCTAAATTCTTTTGGCAGACTGATGGTTTTAGGCTTTTTCCTAGGCCT
AAAACTTATCTAGACTTGTCTACTCTCAGGTTCTTGGGAACTTTAGCAGA
ATCAGGTATGAGTACCCTTTCACAAAGTGACCTTAAATCCAAGCAGAAAG
TGGTTGGTTGCACACATAGCATTTGTGCCATTATTGCATCAGTATATTTT
GGAGGGCAGGTGACTGCTTTATTGTTGCAGAATTTGTAGCTGGGTAATAT
TGATGACTACCTTTCTCTTCTAGTAGTATGCAGAGTACTCTACAGATACT
AGTAATAGTGTGAATCTTTGTTGATGGACATATAAACTGTTTCCAGTCTC
TCTGTAGTATGATGTAAAGTCCTTTGAGTATATGCTGAAAAGGATCTTGA
GGTANATGAATTCTCAGCTTCCTCAAAAAACTCCACACTGATTTTCATCA
TGGCTGTACCAGTTTGTACTCCCATCAAATGAATAAAAGGTCCAGTTTTC
CCGCATCCTCCTAAAAAGGGCTATCACTTGTTTTGTTGATCTTTGCATTC
TTTTCCGAAAAAAAAAAAATTTCTCAAGAAATTTTATATTCTTTTCCTCA
TAGGCAAAAAGTAGTCATAACGAAGGTTTCATTATTTAAAAATCTCTTCT
TTTTCTGCCCCAACTTAAATTGGATAATTTTTGTAGGTATTTTTTAAAAT
AAATATTACTTTTATATTATCGTCCAATACTATAAATTATTTTATTTCAC
ATCTATCTATTAATTAATCTCCGAAATATCATATCTTAAATAATATACAA
TTATNATTATTAATTGTATTATTAAACTTAAGCCATATCATATTTTTCCA
TATNTCATTTGCACCATAATTATATATTTCTTTCAGTCAATAAGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_e13.b1 MSMg01no304_e13.b1 CHROMAT_FILE:
MSMg01no304_e13.b1 PHD_FILE: MSMg01no304_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:43 2005
         (304 letters)



>mm_chr2_136728378_136729086
          Length = 709

 Score =  528 bits (273), Expect = e-154
 Identities = 297/309 (96%), Gaps = 5/309 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccaagnancaactgaagngnggattgtggtatattttttgtcattaaaaggaaaaat 60
           |||||||| | ||||||| | | | |||||||||||||||||||||||||||||||||||
Sbjct: 407 aaaccaagtatcaactgatgtgtgtattgtggtatattttttgtcattaaaaggaaaaat 348

                                                                       
Query: 61  aatcccttttatcaaatcaaatgatctc-----tagaaaattacaagcatgtaggtaact 115
           ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 347 aatcccttttatcaaatcaaatgatctctagtttagaaaattacaagcatgtaggtaact 288

                                                                       
Query: 116 ctactaaagacacacagagagaaaataggggatgcttacaagctgagactttctttttct 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctactaaagacacacagagagaaaataggggatgcttacaagctgagactttctttttct 228

                                                                       
Query: 176 ttctttttttttaaataattctgtctatttttactagctattttctttatttacatttca 235
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttcttttttttttaataattctgtctatttttactagctattttctttatttacatttca 168

                                                                       
Query: 236 aatgttatcccctttcctagtttcccctccaaaaatcccctatcatctaccccctccccc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aatgttatcccctttcctagtttcccctccaaaaatcccctatcatctaccccctccccc 108

                    
Query: 296 tgctcccca 304
           |||||||||
Sbjct: 107 tgctcccca 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 709
Length adjustment: 9
Effective length of query: 295
Effective length of database: 700
Effective search space:   206500
Effective search space used:   206500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)