BAC Information

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BAC

Clone NameMSMg01-304J11
Chromosome2 (Build37)
Map Location 28,598,570 - 28,764,370
singlet/doubletdoublet
Overlap gene1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik
Downstream geneLOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304J11.T7 (MSMg01no304_j11.b1)MSMg01-304J11.TJ (MSMg01no304_j11.g1)
ACCAG429824AG429825
length1,3391,370
length of high quality
(start - end)		708 (40 - 747)780 (96 - 875)
definitionCHROMAT_FILE: MSMg01no304_j11.b1 PHD_FILE: MSMg01no304_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:26 2005CHROMAT_FILE: MSMg01no304_j11.g1 PHD_FILE: MSMg01no304_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,763,677 - 28,764,370)(28,598,570 - 28,599,349)
sequence
NCCCGCTTTNNNNNNCCCTTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCGTCTCCCTCTTGTCCCCTTTTACAGTTCCTGGGTGTTGTAG
TCATGCTTAGGAGACTCGTGCTGGACTCCCAGGGGTCTCCCCGTTTCCAC
CCCGAGGCTCTTGGCCTTCTCATCTGATTTGTCCCGTTTCCACACGGTCT
TAGGAGGTCACGGGCGAGGCCAACGCTCGGCCTCCCTCTGCTGCGTGACA
GGCCGCGAAGCACTCACTGAGCCGACTCATCTGGCTCAGGCCAGGGCGCC
GGCAGCTGGTGCCCGGCCCTGCGGGCGCGGGGCAGACAGATGGACTCCGA
GGCTGCTCCCCGTTGCCCCACCCTCCTCCGCCCGGCGCCCCCCGCTCTGG
CTACCCGCAGTTCCTAGTCTCTAATGCCTGGTAGGACCCCATGGGCCTTT
GCGACGCCACGTTAGGCAACCCTTTGCTCTCTCTCCATCCTCCCCTTGTT
CCCGTCCTGGGAGAAATAGGAGCAGGGGAGGGGGCAGATCAACCACCCGC
CTCTGGCTCTGAGATTTCAGGGGAGTCAGACTCCAGATCACGTTCAAAGG
GCCAAGGTCATCTCCTGACACTGGTCCGTCTCCCGGGACCTGGGCGCAGG
TGCTCCCCTCCCCCACACCACCTGCAGCACACTGACCTGCAGATGGAAGA
AATGCTTGGGAGTTTGGATACTTGCAAGCCAAGCACCTTCCCAGCTTTTC
TGGCCTAACCTGAGAGAACAAGGCAGTGGAGGGAGGTTTCTTTTTTTTTA
NTCCTCCCCTTCTTTTTTTTCTTTTGTTTATTGTATCTTCTCTCTCTCCT
TTCTTTTCCTCGGCTCCTCCTTCTTTTTTTTTTGTTTTCCTTGCCTACTC
NTTTTTCTTTGTTCCTCTTCTCTCTTTCTTTCTCCTTTTCTTCTTCTCCT
TTACTCTTATTTTCTTCTACCTTATTTCTTTTTAGTTTTTTTTTTTATGT
CCTCTAATTTCATTCTCACTCTTTTATCTTTTTATTCTATCAATTTCATT
TTTCTTCTTTTCATTACTGCCTTCTCCTCATAATCACATCTCCTTTCTTT
CCATCCAATATTCTTTTGCTCCTCATATTCCTTAATTTGTACTTCTCTTC
TCTGATACTCTTTAATTTCATCCTATTTCTTCCTATCTGTTTAATACATT
TTCTATTATCTTTCTACTTCTACACTTTTCATATCCATTTTCTTATCATT
GTATATTCACTTTTCTCTCACCGCTTACTAGCTTTATATTCTATATTTTA
GCCAATTAGTATTCATACTCTTTATACTCTTTCCATACA

NNNCCGTTTCANNNNNNNNACGAAGTGAGGCTGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTAAAGGACCGCTTGA
TAGGGAAATGGTATCAAATAGTCCTTCCAGTTCCCCCATGTTGTCAGTAC
TAGGAAAGCATTCGTGAATCTGACTCTCCAGAAGAGCATCTCAGAAGAGT
TCTCAGGCCAGCTTCCCGGGGCAGTGCACTGGGCGTGGTGATGCACACCG
GCAGTCTCAGCACTCGGGAGGTGATGATCACTCTCAGCTACATTATGAAT
TTAAGATTAGCCTGAGCTGTGTGGGACCCTGCCTCAAAATAATAATGATG
ATAATAATAATGATGATGATGGCTAGTGAGATGGTTCAGCGGGTAAGAGC
ACTGACTGCTCTTCCCTTGGTCCTGAGTTCAAATCCCAGCAACCACATGG
TGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCT
GAAGACAGCTACAGTGTACTTACATATAATAATAAATCTTTAAAATAATA
ATAATAGCAGCAGCAGTTGGAGCAAACACAGTGGTACCTGATGTGTGTCT
GTGAGTTCCACTTCTGCCCCATGAGTGCCAAGTCTCACGCTGCAGATATG
TGGACTGAATGAATGAACAGGATGCCTGAGTCAAGTAGGTGGATAGCTGT
GGCTTTTGCCCTGTACCATGCTGTTCATGACTGCATGAAAAACCAGCTCC
CCACCCCCACCAGCAAGCACCTAGGAGATCAGACCCGAAGAGAATGAGCA
AGCCAAGGTCACAGAGGTAACAGCAGCTGTGGGTGAACAGCAAACCTTGA
CCCTTTGTGCAGCGTGCCTACATGTGTCCCCCAAAATATGAAATTACAAA
AAAAGGCAAGCATTTGACGAGTCTCTGAGTTCACATCCCTTGTGTTATTC
CACAAAGTGGTTTCTCATGTATATAGCTTGGCAGCATGGTAGATTATCAT
TGATGGATTGAAATCCCACCCCTTGGACCCTGGGGAATGAAAACTGGGCG
GGGGGGGAGGGTTAACTCCAAAGGGGGCGGGCCCTCCACCTCTATAAGGC
CCCGGTGGCACCAAAAGTTTTTTTTGGGTGGTGAATAAAGAGAATTTCTT
TATTAAAACACATTTTTTTTTTTTTGTGGTTCACAAACTTTTTTAGGTTT
GTTCTGGTTTGTCTAATATATACATTTATCAAAAGACTTGTTTATTTTTG
AGCAGTGCCCTCCCCTTTCAAAAAAATAGAAACTCCCACTTCTGATGTGA
GTATCTTCTAATACTCTTTCCTTCCTCATTCTTTATTTATCTCATTTATA
TCTCTTCTATGTTATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_j11.b1 MSMg01no304_j11.b1 CHROMAT_FILE:
MSMg01no304_j11.b1 PHD_FILE: MSMg01no304_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:26 2005
         (708 letters)



>mm_chr2_28763463_28764570
          Length = 1108

 Score = 1265 bits (654), Expect = 0.0
 Identities = 684/694 (98%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattcgtctccctcttgtccccttttacagttcctgggtgttgtagtcatgcttaggag 74
           |||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||
Sbjct: 908 gaattcgtctccctcttgtcccgttccccagttcctgggtgttgtagtcatgcttaggag 849

                                                                       
Query: 75  actcgtgctggactcccaggggtctccccgtttccaccccgaggctcttggccttctcat 134
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 acttgggctggactcccaggggtctccccgtttccaccccgaggctcttggccttctcat 789

                                                                       
Query: 135 ctgatttgtcccgtttccacacggtcttaggaggtcacgggcgaggccaacgctcggcct 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgatttgtcccgtttccacacggtcttaggaggtcacgggcgaggccaacgctcggcct 729

                                                                       
Query: 195 ccctctgctgcgtgacaggccgcgaagcactcactgagccgactcatctggctcaggcca 254
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccctctgctgcgcgacaggccgcgaagcactcactgagccgactcatctggctcaggcca 669

                                                                       
Query: 255 gggcgccggcagctggtgcccggccctgcgggcgcggggcagacagatggactccgaggc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gggcgccggcagctggtgcccggccctgcgggcgcggggcagacagatggactccgaggc 609

                                                                       
Query: 315 tgctccccgttgccccaccctcctccgcccggcgccccccgctctggctacccgcagttc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 608 tgctccccgttgccccaccctcctccgcccggcgccccccgctctggctacccgcagctc 549

                                                                       
Query: 375 ctagtctctaatgcctggtaggaccccatgggcctttgcgacgccacgttaggcaaccct 434
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctagtctctaatgcctggtaggatcccatgggcctttgcgacgccacgttaggcaaccct 489

                                                                       
Query: 435 ttgctctctctccatcctccccttgttcccgtcctgggagaaataggagcaggggagggg 494
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 488 ttgctctctctccatcctccccttgttccagtcctgggagaaataggagcaggggagggg 429

                                                                       
Query: 495 gcagatcaaccacccgcctctggctctgagatttcaggggagtcagactccagatcacgt 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcagatcaaccacccgcctctggctctgagatttcaggggagtcagactccagatcacgt 369

                                                                       
Query: 555 tcaaagggccaaggtcatctcctgacactggtccgtctcccgggacctgggcgcaggtgc 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcaaagggccaaggtcatctcctgacactggtccgtctcccgggacctgggcgcaggtgc 309

                                                                       
Query: 615 tcccctcccccacaccacctgcagcacactgacctgcagatggaagaaatgcttgggagt 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcccctcccccacaccacctgcagcacactgacctgcagatggaagaaatgcttgggagt 249

                                             
Query: 675 ttggatacttgcaagccaagcaccttcccagctt 708
           ||||||||||||||||||||||||||||||||||
Sbjct: 248 ttggatacttgcaagccaagcaccttcccagctt 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no304_j11.g1 MSMg01no304_j11.g1 CHROMAT_FILE:
MSMg01no304_j11.g1 PHD_FILE: MSMg01no304_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:26 2005
         (780 letters)



>mm_chr2_28598370_28599549
          Length = 1180

 Score = 1415 bits (732), Expect = 0.0
 Identities = 768/780 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgatagggaaatggtatcaaatagtccttccagttcccccatgttgtcagtactagga 60
           |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 201 cttgatagggaaatggtatcaaatagtctttccagttcccccgtgttgtcaatactagga 260

                                                                       
Query: 61  aagcattcgtgaatctgactctccagaagagcatctcagaagagttctcaggccagcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcattcgtgaatctgactctccagaagagcatctcagaagagttctcaggccagcttc 320

                                                                       
Query: 121 ccggggcagtgcactgggcgtggtgatgcacaccggcagtctcagcactcgggaggtgat 180
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 321 ccggggcagtgcactgggcgtggtgatgcacacccgcagtctcagcacttgggaggtgat 380

                                                                       
Query: 181 gatcactctcagctacattatgaatttaagattagcctgagctgtgtgggaccctgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcactctcagctacattatgaatttaagattagcctgagctgtgtgggaccctgcctc 440

                                                                       
Query: 241 aaaataataatgatgataataataatgatgatgatggctagtgagatggttcagcgggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataataatgatgataataataatgatgatgatggctagtgagatggttcagcgggta 500

                                                                       
Query: 301 agagcactgactgctcttcccttggtcctgagttcaaatcccagcaaccacatggtggct 360
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagcactgactgctcttcccaaggtcctgagttcaaatcccagcaaccacatggtggct 560

                                                                       
Query: 361 cacaaccatctgtaatgagatctgatgccctcttctggtgtgtctgaagacagctacagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaaccatctgtaatgagatctgatgccctcttctggtgtgtctgaagacagctacagt 620

                                                                       
Query: 421 gtacttacatataataataaatctttaaaataataataatagcagcagcagttggagcaa 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gtacttacatataataataaatcttaaaaataataataatagcagcagcagttggagcaa 680

                                                                       
Query: 481 acacagtggtacctgatgtgtgtctgtgagttccacttctgccccatgagtgccaagtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacagtggtacctgatgtgtgtctgtgagttccacttctgccccatgagtgccaagtct 740

                                                                       
Query: 541 cacgctgcagatatgtggactgaatgaatgaacaggatgcctgagtcaagtaggtggata 600
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 cacgctgcagatatttggactgaatgaatgaacaggatgccagagtcaagtaggtggata 800

                                                                       
Query: 601 gctgtggcttttgccctgtaccatgctgttcatgactgcatgaaaaaccagctccccacc 660
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 gctgtggcttttgccctgtaccatgctgttcatgactgcgtgaaaaaccagctccccacc 860

                                                                       
Query: 661 cccaccagcaagcacctaggagatcagacccgaagagaatgagcaagccaaggtcacaga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cccaccagcaagcacctaggagatcagacccgaagagaatgagcaagccaaggtcacaga 920

                                                                       
Query: 721 ggtaacagcagctgtgggtgaacagcaaaccttgaccctttgtgcagcgtgcctacatgt 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 921 ggtaacagcagctgtgggtgaacagcaaaccttgaccctttgtgcagcgtgtctacatgt 980


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 780
Length of database: 1180
Length adjustment: 10
Effective length of query: 770
Effective length of database: 1170
Effective search space:   900900
Effective search space used:   900900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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