BAC Information

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BAC

Clone NameMSMg01-305E14
Chromosome2 (Build37)
Map Location 128,272,883 - 128,278,461
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729
Downstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305E14.T7 (MSMg01no305_e14.b1)MSMg01-305E14.TJ (MSMg01no305_e14.g1)
ACCAG430308AG430309
length1,3001,303
length of high quality
(start - end)		416 (43 - 458)424 (62 - 485)
definitionCHROMAT_FILE: MSMg01no305_e14.b1 PHD_FILE: MSMg01no305_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:01 2005CHROMAT_FILE: MSMg01no305_e14.g1 PHD_FILE: MSMg01no305_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,272,883 - 128,273,291)(128,278,070 - 128,278,461)
sequence
NGGCCGGCACTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCAGAGACCTATGGGCTCAGTCACACATATGACCAGACCCAGGGAGC
TTCCCCTAATCTTCAAGCTACTGAGATACACATAGACTGTGATTCTCTCC
AGAGAAGAGCTTGGTAGAGAGAATGATGAAGCATCCAACCAGGCATGAAC
CTACCAATTGTAGATACCATGCCAAACTAATGTAAAAACAAAACAAAATG
AATCCCTCGTCACTTGCCGCAGTTCAGAGACCTGGCCCTGGGGTCATGAG
ACTGGGTGAGCTGGCCCTGTCCCTCACCAGCTGCAGGACTTGGGAGAGCG
GGCCCTGCATCTCCCTTGGGCAACATGGTAGAGCTGGCCATGGTGGAGGG
GATGGAGATAAGCCAGAGGGTGAGAGCACAGAAGAGCTGGCCCTTCATTT
GTCTGTTTTGTACCCCCCCCCCGTTCAAGGGTGATGCCCACCCAAAAAAA
GGGGTCGCCACCTGAGTTAGCACCGAGGACATGAGAGTGGGAGAGCTACC
CTTGCCCCTATAATGGCTGTAGCCATTGACTATATATATTGACTGGGCAA
CACATTGGATCTGACCCGGATGGAAAAGGCACAGGCAAGCCAGCCTCAAG
GGTGTGAGAGCAGGAGAGCTGGTCCAGCCTCTTGCAGCACTTGGAGAAGA
GGGCCCTGTGCCTTGAGAGTAGAGCTGGCCCTGGAGGCATAGGTGCAAGT
GAGCCAGTAGGAAGGCATGAGATGAGAAATGCTGACCCTGCCTCCTGCCG
ATGGCTGTGTTAGGCTGCCTAGTTTGGGCAGTGCTGAAGACCTTGCCCTA
GTGGTGGGATAAAAGAGATGGCAGACTGACCAATTCAGTGCCCGACCACC
CAGGCCCAGAACCAGGATTCTGCAAATGGTTGGGAAACCTGGAAAGGCCC
GTCCTGCTGATTCCGATCTCCATGACCCAGACCACCATCGGATAACCGGA
AGAAGCCCCATGAGGATCCATAATGATGGTGCCCAAAAGCCAAGAATTCC
AACCCAAGAATGATCCGTTGGACGCACATTTACAAGGAAAAAAGGTGGGA
AAAGGAAATCCCGTGGAAACCCTGGAAAAAATGGAACTTCCAAGAACAAG
GTTTTCGGGCTTTTTGTTATAGGGGGGGGGTTGAAAACGGCCCCACACAA
GATGCTCAACCTCCTGATGTGGACCTTTTTGGGGTACTCGGAGGGGCACC
TCTCCCTAATCTATTGTGGAGCTAATACGAATAATAATAGATGTTCAGTG


NNNCCGCTGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTAATGATGAAAGCATTCATTGCTTGATTTAAGAAGTGA
TTTATGGGACTAGCGAGGATGCTCAGTGGATGAAGGTTCTTCATCAAGCC
TTATGACCTGAGTTCAACCCTTGGGATTTAATGGTGGAAGGAGGATACCA
GCTCCAAGTTGTCTAGTGACCTCTGCATATACACCCATACACACGCGCGT
GCAAGTGCACACACACACACATACACACACGCACACACACACACGCACAA
AGATAAACATGATAATTTAATTTTTTGTGGTTTTCTTTTCTTCCTTAGAT
TTATTTATTTTTACGTTCATTGGTGTTCTGTCTGCGTGTATGTCTGTGTG
ATTTTGTCAGATCCCCTGGAACTGGAGTTACAGAGAGATGTGCGCTGCCA
TGTTTTTTTTCCCCCCCCCCCCTGAACCTTCGGGAAGAACAAAAAAAGGG
GGGAGCCATCTCTCCAGTCCCAATAATTATATTTTTAAGAAAATAACTGA
TTTGTGGTATTGTATCTAGGACAAGATACAATTTTGCCCTTGTTCTGAGA
CTCTCAAGTCACTTTACAATGCCACCTGTCCTCATATTAAGGAGAAAGAG
GAGGACTAGAAACACCAGAGGCTCAGGGCACTGGCTGCTCTTCCAGAAGG
CCTGGGTTTGAGTCTCAGTACCCACGTGGCAGCTTACAACTGTCTGTAAC
TCTAGTCCCAGAAGACCTGACACTTTTCAGCCTTTGTGAGCACTGAACAC
ACGTGTTGTACAGCCATACATGCAGGCAAAACTCCCATACACATAAAAAT
TAATCAATTAGTTTTTTTAAAGGAAAAGAAGAATAAACTACTTTTTCTCT
TTAGCAGCTGGACCCCCACAGAAAAGGCAAACTCTGAAGTCATTTCCAGG
CAGAAGAATTATGCTCTGTCCATACAGTATATCTAAATCAGTCTTGGTGT
TCCGGTCCTGACTCAGGATGTGGCTACGGGCACACCACATATACCATCCC
TTTCCAGCTCATGAACAAATCCCCTCTGAGACCAGAAAACCCTGCTTGAA
AACATTCCGAGGTTTAGCCAAAGTTTAATTTTTGTTGGGAAACCCCCAAT
TGGTCAAACCGGCTCCAAGGCTTTTTCTGGGGAAACCTGAGAGGTTTGGA
AGGTCCCATTTCCCCCTGGGGAAACTCCCTGTGGTAAAACCCTCTAATCC
TATCCACACTGGGTAATGGGTTGAAAAATAAGAAGGGTGGCGGGGCAGGG
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_e14.b1 MSMg01no305_e14.b1 CHROMAT_FILE:
MSMg01no305_e14.b1 PHD_FILE: MSMg01no305_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:01 2005
         (416 letters)



>mm_chr2_128272679_128273494
          Length = 816

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcagagacctatgggctcagtcacacatatgaccagacccagggagcttcccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcagagacctatgggctcagtcacacatatgaccagacccagggagcttcccc 264

                                                                       
Query: 65  taatcttcaagctactgagatacacatagactgtgattctctccagagaagagcttggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatcttcaagctactgagatacacatagactgtgattctctccagagaagagcttggta 324

                                                                       
Query: 125 gagagaatgatgaagcatccaaccaggcatgaacctaccaattgtagataccatgccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagagaatgatgaagcatccaaccaggcatgaacctaccaattgtagataccatgccaaa 384

                                                                       
Query: 185 ctaatgtaaaaacaaaacaaaatgaatccctcgtcacttgccgcagttcagagacctggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaatgtaaaaacaaaacaaaatgaatccctcgtcacttgccgcagttcagagacctggc 444

                                                                       
Query: 245 cctggggtcatgagactgggtgagctggccctgtccctcaccagctgcaggacttgggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctggggtcatgagactgggtgagctggccctgtccctcaccagctgcaggacttgggag 504

                                                                       
Query: 305 agcgggccctgcatctcccttgggcaacatggtagagctggccatggtggaggggatgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcgggccctgcatctcccttgggcaacatggtagagctggccatggtggaggggatgga 564

                                                            
Query: 365 gataagccagagggtgagagcacagaagagctggcccttcatttgtctg 413
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gataagccagagggtgagagcacagaagagctggcccttcatttgtctg 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no305_e14.g1 MSMg01no305_e14.g1 CHROMAT_FILE:
MSMg01no305_e14.g1 PHD_FILE: MSMg01no305_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:02 2005
         (424 letters)



>mm_chr2_128277684_128278507
          Length = 824

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaatgatgaaagcattcattgcttgatttaagaagtgatttatgggactagcgaggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctaatgatgaaagcattcattgcttgatttaagaagtgatttatgggactagcgaggatg 719

                                                                       
Query: 61  ctcagtggatgaaggttcttcatcaagccttatgacctgagttcaacccttgggatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctcagtggatgaaggttcttcatcaagccttatgacctgagttcaacccttgggatttaa 659

                                                                       
Query: 121 tggtggaaggaggataccagctccaagttgtctagtgacctctgcatatacacccataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tggtggaaggaggataccagctccaagttgtctagtgacctctgcatatacacccataca 599

                                                                       
Query: 181 cacgcgcgtgcaagtgcacacacacacacatacacacacgcacacacacacacgcacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cacgcgcgtgcaagtgcacacacacacacatacacacacgcacacacacacacgcacaaa 539

                                                                       
Query: 241 gataaacatgataatttaattttttgtggttttcttttcttccttagatttatttatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gataaacatgataatttaattttttgtggttttcttttcttccttagatttatttatttt 479

                                                                       
Query: 301 tacgttcattggtgttctgtctgcgtgtatgtctgtgtgattttgtcagatcccctggaa 360
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 478 tacgttcattggtgttctgtctgcgtgtatgtctgtgtgaaggtgtcagatcccctggaa 419

                                           
Query: 361 ctggagttacagagagatgtgcgctgccatgt 392
           ||||||||||||||||||||||||||||||||
Sbjct: 418 ctggagttacagagagatgtgcgctgccatgt 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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