BAC Information

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BAC

Clone NameMSMg01-306G22
Chromosome2 (Build37)
Map Location 122,636,589 - 122,809,621
singlet/doubletdoublet
Overlap genenone
Upstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306G22.T7 (MSMg01no306_g22.b1)MSMg01-306G22.TJ (MSMg01no306_g22.g1)
ACCAG431096AG431097
length738743
length of high quality
(start - end)
246 (445 - 690)184 (138 - 321)
definitionCHROMAT_FILE: MSMg01no306_g22.b1 PHD_FILE: MSMg01no306_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:13 2005CHROMAT_FILE: MSMg01no306_g22.g1 PHD_FILE: MSMg01no306_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,636,589 - 122,636,834)(122,809,438 - 122,809,621)
sequence
NNCCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCTTATGTCTCTAGAAACCTTATTCAGACATCTATG
CATTCAATGACTATTTACCAGACACCTTCTAACTGCTACTTTCAGCCTGG
GGGATACAGTGAGGAACCAGAATAAGGACTGTGTGTGTGTGTGTCCCTTG
TGCTAGCTTCTTTCCTGGGGGTGGGTGGGGGGGCAGGGGAGCTTGCTGAG
TTAGACATGAGTTGATTGGGAGGACACTTTCCTTTCAGTTCTGGGATAAA
GTTGAGCACCACCCTAGCAGGAGGCCCCATACTGAGGGGAATGGAAGACT
TTCTCAGATGTGCATCAGGTATTTATCTTGATCACCACCTGCTCCTGCCC
AGGTATCAGAGGCAGTCCTTTCAGTCTCCAGGATGCCCCTATTGTCTAAA
TGGCAATAGCCCGTGACTCCTCCCTCATCCTGCTCTCAGGATGCAAAGCC
ATGCTACACATGGTGCTCATATTGGGCTGGCTACTCACCTTCAGGTGGTA
CACACAAAACAGTTAGCCAAAGTCAGAGAAGTCCTGTGCCCTCCTGGAAT
TCCTGCACCTGCCTCTGCACTCCTGCAGGATTATAAGTTCCCTCCAATGG
ATCCTTCTCTACAGGCTCTAGGAAGAATCCAGAGTGGCTTCCTGGGTGTG
GAAAGAAATGCTAAAAAGAATGCGGTGTCCTGAGCCTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCCTATAGAAGAAGCTGNGCATGNGA
TTAAGGATATGCTTGTGTTATGGCTGAAAAAATAGTGTAGTTTGTATCCT
GAATGTTCCTAAGGGCCTACTCACTAAAAGCTTGGTCCCCATTCCATAGT
CCTACTGAAAGAGTAGGGAAAACGGAAGAGGAGCTCTGCAGAAATAATTT
ATCCCATTGGGGCAGCCCTAAAAGGAAATGATGGGACCCAAGCCTTTCCT
ATCTTTCCTGTGGCTGCTCAATCTTTTTTTTGTAAGTACTCCAGGGTGCC
ATTCTTCCATATTTCNATAGTTTCNGGGCCAANCGCTCATGGACCCAGAC
ACCTGACACCAAGAATCAAAAGCTCTTAAAACATAAAAATGGATGTTGTG
GGGAATTTTCTTACAAGATTGACACAGATGACCTCACTTGGAATAGCCAA
AAAACTGGAAGAAATTCAAATGCTAATCAAATGTTGATTGTTTAAATAGC
TTCAGTACAAACATGTAAATTCCTTTTCATTACTCACTATTCAAAAGAAC
TTTAAAAGATCTTTACAGGGGCTGGAGAGATGGCTTAGCAGTTAAGAGCA
CTGACTCCTATTCCATATGTCCTGAGTTCAAATCCCAGCAACCACATGGT
GGCTCACAACCATCTGTAATGAGATCTGACACCTTCTTCTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_g22.b1 MSMg01no306_g22.b1 CHROMAT_FILE:
MSMg01no306_g22.b1 PHD_FILE: MSMg01no306_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:13 2005
         (246 letters)



>mm_chr2_122636389_122637034
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaatggcaatagcccgtgactcctccctcatcctgctctcaggatgcaaagccatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaatggcaatagcccgtgactcctccctcatcctgctctcaggatgcaaagccatgc 260

                                                                       
Query: 61  tacacatggtgctcatattgggctggctactcaccttcaggtggtacacacaaaacagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacatggtgctcatattgggctggctactcaccttcaggtggtacacacaaaacagtt 320

                                                                       
Query: 121 agccaaagtcagagaagtcctgtgccctcctggaattcctgcacctgcctctgcactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaaagtcagagaagtcctgtgccctcctggaattcctgcacctgcctctgcactcct 380

                                                                       
Query: 181 gcaggattataagttccctccaatggatccttctctacaggctctaggaagaatccagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggattataagttccctccaatggatccttctctacaggctctaggaagaatccagag 440

                 
Query: 241 tggctt 246
           ||||||
Sbjct: 441 tggctt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no306_g22.g1 MSMg01no306_g22.g1 CHROMAT_FILE:
MSMg01no306_g22.g1 PHD_FILE: MSMg01no306_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:13 2005
         (184 letters)



>mm_chr2_122809238_122809821
          Length = 584

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtttgtatcctgaatgttcctaagggcctactcactaaaagcttggtccccattccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtttgtatcctgaatgttcctaagggcctactcactaaaagcttggtccccattccat 325

                                                                       
Query: 61  agtcctactgaaagagtagggaaaacggaagaggagctctgcagaaataatttatcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtcctactgaaagagtagggaaaacggaagaggagctctgcagaaataatttatcccat 265

                                                                       
Query: 121 tggggcagccctaaaaggaaatgatgggacccaagcctttcctatctttcctgtggctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggggcagccctaaaaggaaatgatgggacccaagcctttcctatctttcctgtggctgc 205

               
Query: 181 tcaa 184
           ||||
Sbjct: 204 tcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)