BAC Information

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BAC

Clone NameMSMg01-306J01
Chromosome2 (Build37)
Map Location 152,984,882 - 152,985,042
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck
Downstream geneTm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306J01.T7 (MSMg01no306_j01.b1)MSMg01-306J01.TJ (MSMg01no306_j01.g1)
ACCAG431190AG431191
length731799
length of high quality
(start - end)
321 (46 - 366)164 (78 - 241)
definitionCHROMAT_FILE: MSMg01no306_j01.b1 PHD_FILE: MSMg01no306_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:23 2005CHROMAT_FILE: MSMg01no306_j01.g1 PHD_FILE: MSMg01no306_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATGTGATCCGGCTGGCCTTAAACTCACAGAAATCCACCTGCC
TCTGGCTTCTAGTGCTGATATTACCGCTGTATGCAAGCACATTTGGCTAT
CATCAATATGGCAGCCATTCATCCATTCCAGAAACACTGCAAGGCTGAAA
TGTGCCAGGTACTGTGCTAGATGTTATAATATAAAATCAGAAGGATAAGG
TTTCTGTCCTCAAGGCATTTCATTCTAATTCAGGTTAGGAGACACTAAAC
ATGAAAACAAATTCATTATGGTATATTTTGATGATTGCAAGGGAAAAAAT
GAAAAGGTTTGGTGATTTTTTTACTCCCCCCCCCCCCAGTAGAGAGGTCA
ATGGAGTCCTCTTTGGTGACACGTATGTTGAGACTTCAAGGATGAGAAAG
AGTTAGCAGAAATTATAGGAAGGTACTCCGAGAAGAATAGCTCATAGACC
TTTATGTCTGTAAGCAATAGAAAGCCGGTTACTGTGGCTGTAGCCAGAGG
GCCATGGTAGAAGGGGTGTGGAGAACAGTGGAGCCAATCTTGCAAGGTCA
GGCCATCAGATGATGGCCATGGTCGGGAATGCAAGCTACTCAAGGATTGA
TAGAAGGGATGGATCATATAATGATGATTCACGACCGCCTTTAAATTGGA
TCCCCTCCACTGGTCTTAGAAATCCTTGGTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACAGCCAGGGTTACACAGC
AAAACCCTGTCTCAAATATATATATTTCCTTATCAATATAAATATCTTCT
TTTATATTATGTGTAGGGGTATTTTGCTGTATATATGGCTACGCATCATT
CACATACCTGGTCCCTACAGAGGCCATAAGAGGGCATCNAANNNNNNNNN
NNNCNCCCNCCCCCCCCCCCCCCCCCCCTCCCCTCCCTTTTCTTCCTCTC
CCTTCCCCTTTTTCTTTCTTCCCTTTTTTTATCCCTTTCTCCTTTTTACG
CCTATTTTTATATTTTATTACCTCTTTTTTATTCTCACCTGCAGGGCCTA
TTCGCACCGTTACCCTCCGCCTATTGATCCTACTTGAGCCACTGCGATGT
AGTACTTATAATAATACCCCACCATCCGCTTCTTATAATTTATCTGCCTA
CCTTCTTTATGATCCCCCCCGCGTTTGTCCTTCTCCGCGCTGGTTATCGG
GTTATTTCTATAACAAATAATCGAACACTTTCTTAAAATTTTTATTATCC
CGCCTATATTCCCTTTATATACTATCTACATGCATTACTTTACCTTGCAC
ATTCCATCACTATTATTATCACATTAAATATGAAATGTAGGTAACAATGA
CCGTTTCCCGATTTTTTACGCTTTTCTCCTCCTCCTCCCGCTCATATTTG
TTCTTAGTTCCGCCTATTTTTCCCCCCGTCAATATCTGAATATGCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_j01.g1 MSMg01no306_j01.g1 CHROMAT_FILE:
MSMg01no306_j01.g1 PHD_FILE: MSMg01no306_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:23 2005
         (164 letters)



>mm_chr2_152984682_152985245
          Length = 564

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacagccagggttacacagcaaaaccctgtctcaaatatatatatttccttatcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacagccagggttacacagcaaaaccctgtctcaaatatatatatttccttatcaat 260

                                                                       
Query: 61  ataaatatcttcttttatattatgtgtaggggtattttgctgtatatatggctacgcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaatatcttcttttatattatgtgtaggggtattttgctgtatatatggctacgcatc 320

                                                    
Query: 121 attcacatacctggtccctacagaggccataagagggcatc 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcacatacctggtccctacagaggccataagagggcatc 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)