BAC Information

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BAC

Clone NameMSMg01-307C11
Chromosome2 (Build37)
Map Location 87,388,203 - 87,388,488
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307C11.T7 (MSMg01no307_c11.b1)MSMg01-307C11.TJ (MSMg01no307_c11.g1)
ACCAG431606AG431607
length743749
length of high quality
(start - end)		531 (40 - 570)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no307_c11.b1 PHD_FILE: MSMg01no307_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:08 2005CHROMAT_FILE: MSMg01no307_c11.g1 PHD_FILE: MSMg01no307_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGGAATTCAT
GAAATTTCCAGCAAATGGATGGAACTTGAAAATCTCATTCTGAGTGAATT
AACCCAATCACAAAAGAGCACACATGACATTCACTCACTAATAAGCGGAT
ATTAGCACAAAAGCTCTAAATACCCATGATACATTTCACAGACCACATGA
AGCTCAAGAAGAAGGAAGACCAAAGTGCGAGGTGCTTCAGTCCTTCTTAG
AAAGGGGAACAAAATACTTACCGGGGTAAATATGGAGACAAAGTGTAGAG
CAGATACTGAATGTAGAGGCCATTCAGAGACTGCCCCACCTGGTGATCCA
TCCCATATACAGTCACCAAACCTGGAAGCTATTGTGGATGCCTATAAGTG
CTTGCTGACACCCCCCTGATACCGCTGTCTCTTGAATGGCTCTGCCAGAG
CCTGACAAATACAGATGCAGATGCTCTCAGCCAATCATAGGACTAAGCGC
TCGGTCTCTGATCGAGGAATTGGAGAAGGGCCTGAAGGATCTGAGGGGGT
TTGCAGCCCTGTGAAAGGAGCAGCAGTGTCAACAGGCCAGACCCCTGGAG
TTTCCTAGTACTGGACCATCAACCAAAGAGTACTCATGGAGCAACTCACA
GAAATGGCCACATATGTGAAGAGGATGGCCTTGCTGGACATCAGTGGAGG
AGAGGCCCTTGAGTCTGAGGGTATCCGATGCCCCTATGAAAGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAGTTATGAGCCTGTCAGCCTGCC
CCTGAGTGCACAAGATTTTGCCCCTTAGGAATAAGAGGAAGTTAAAATAA
CAGGATTAAGGTTGAGATTTCAAACAATCAACATGATTGAAGAGCATTCC
TATTATCAATCTTTAAACATTTTTATGTAGGTAATTCCCAAACTTAGCAT
TAGCAAATTGACTTCAATTAATTTGGTACTCATTACTTTGTGATCATCAC
TCATAATATATATTTTAATGTTATAAAATAGGGAACTATTACATATCCAT
ACACCTGTATTGATTTATGTTCCCCCCCCCCCCCCAACAAACCATGCATT
CATATTTACTTAGCGCCACCCGGAAACTTCATTAGCTCATTGCCTAAAGA
TATTTATATATGGTTCTTGTATTTTATGGCTAATATTGATATATAACTGA
GTACACACTGTGCATGCCCCTTTGGCACTGGGTTACCTCACTCAGGATGA
TATTTTCAAGTTCCATTCATTTGCCTGGAACATTCATGGTATCTTGGTTT
TATACAAATTTTATCTTGGTTTTATACAAATAAAAGTGCTATGAAAATAA
TCAAGCATTTGTCTTTGTGAGATGTTGGAGCATCTTTGGGTATATGCCTA
AGAGTGGTATATCTAGGTCTGCAGATAGAACTATTCCAAGTTTTCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_c11.g1 MSMg01no307_c11.g1 CHROMAT_FILE:
MSMg01no307_c11.g1 PHD_FILE: MSMg01no307_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:08 2005
         (289 letters)



>mm_chr2_87388003_87388691
          Length = 689

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgccccttaggaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 tctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctcttaggaata 260

                                                                       
Query: 61  agaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatgattgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatgattgaaga 320

                                                                       
Query: 121 gcattcctattatcaatctttaaacatttttatgtaggtaattcccaaacttagcattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattcctattatcaatctttaaacatttttatgtaggtaattcccaaacttagcattag 380

                                                                       
Query: 181 caaattgacttcaattaatttggtactcattactttgtgatcatcactcataatatatat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 caaattgacttcaattaatttggtactcattactttttgatcatcactcataatatatat 440

                                                         
Query: 241 tttaatgttataaaatagggaactattacatatccatacacctgta 286
           |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tttaatgttataaaatagggaactattatatatccatacacctgta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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