BAC Information

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BAC

Clone NameMSMg01-307D03
Chromosome2 (Build37)
Map Location 92,783,550 - 92,958,742
singlet/doubletdoublet
Overlap geneSyt13, LOC100042784
Upstream geneDgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
Downstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307D03.T7 (MSMg01no307_d03.b1)MSMg01-307D03.TJ (MSMg01no307_d03.g1)
ACCAG431635AG431636
length754813
length of high quality
(start - end)
190 (126 - 315)214 (173 - 386)
definitionCHROMAT_FILE: MSMg01no307_d03.b1 PHD_FILE: MSMg01no307_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:11 2005CHROMAT_FILE: MSMg01no307_d03.g1 PHD_FILE: MSMg01no307_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,958,553 - 92,958,742)(92,783,550 - 92,783,763)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCAGGTTTCCAGCAGAGCCCCACCCCCTACCCCCAGGAGTCAGG
ACTGTATATACAGCATTATGCCCTACAGGACGTGGGGTAGACAGATGCTG
TGCCCTTCTCTCTTCACACGGCCTGTCAGTCCAGCCAAGGTCCTATCAGA
ACACTGAAGAAAGGACAGTGGAGAGCCCATGAAGAGAGTCTGAACCCTGC
CTAGAAAGACCACTTCACCGCCCACTCTGCCTTCTCCAGCCCTCCATATT
AGCAGGTACACACTATAGTGTTGGGAGCCGGCAGATAGGCAGGCCAGTTC
AGGGACCATTTTTTTTTTTGCCACCCCCCCCCCCAGAAAAGGGGTCACTG
TGGTGGCTGCAAAGGCCCCCGCCTAAGAAAAAAAATTTTTTTTCCCCGCG
GCTCTGGATCCCCAGCTTTGCCGCAAACTAGTCAGGATCTAGCAGTTCTC
AGCAGTGTTTACGAATGAATGTCTAGTATACGAGAAGAATATACGGATCA
GAACTCCCATAGGTTTTGATTTTGTAGAGTGCATATTTACTGTCTTCTTG
TCTCAGTCTCTCCCTCTACTTCCTCCCTCTCTCCCTCTCTCCCTTCTTAC
CTTCTCCATCCTTCATTCTTTTCCTCCCCTTTCTTTCTTCATCCTCCCCT
TTTTCTTCTCCTTTCTCCCCCTCTCTTCTCCCTTGCTTTATTTCTTTATT
TCTG
CCCGCCCCGCCTTTTGTCTTCTCCCTCCCCTTTTAATTANNNTNTTACTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAGCTGACAGACATCTTTCTTCCGCAT
GGTGACTCAAGGACCAGTCCCTTCCACCTGTAGTTCTCTACACTTCTCAG
ACCTCCTGCTAGATGCTTCTAGCTGATAAGATGAGAATTAGAAGAGGTCA
CAGCCATTTCATAATAGCCTTAATGGATGGAGCGTGAGTCACTTCTTCTC
ATATCCATTGGTTGGAACCTTCTCACTTGGCCACACTTTGTTGCAGGGCA
TTTTAGGAAAGGTGATTTGTTAGGCTGCCTACCAGGATGGGAGATAAGCG
ACGGATTAGTAGTTATCGCCCNTTCGNNCCCCAATGAATTTGACATTGAA
CAGGGCTCTGTGCCCCCCAAAGACAGAAAAAAAAAAAGGTCAGAGGCGGT
TCTGAGAACTTATCCTGGATTCGGGTAATCTGTCTGATAGGATATTCTGG
GGAGTACTCCTTTGACAGTACTCCCCGCCACCAACAAAGTTCAGACTTTT
ACCAAGAAACCCGACTTGGAAACACGGTTGTGTCAGATGCGCTGTTTCAC
TTCCTAAAGACTTTTGTTTCTGAGCCAACACAACTTTCCATTTCTGGTGT
TACCCCACCCCGCAACAGGTTAAAATAGGCCCCCGTTTTTACCCCCTTTT
TAAACCCTTCCTTTATTTCTTAAATGCAGCCCCCCGTCTTTTTTTTTGGC
CCACCGTGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_d03.b1 MSMg01no307_d03.b1 CHROMAT_FILE:
MSMg01no307_d03.b1 PHD_FILE: MSMg01no307_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:11 2005
         (190 letters)



>mm_chr2_92958353_92958942
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacgtggggtagacagatgctgtgcccttctctcttcacacggcctgtcagtccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caggacgtggggtagacagatgctgtgcccttctctcttcacacggcctgtcagtccagc 331

                                                                       
Query: 61  caaggtcctatcagaacactgaagaaaggacagtggagagcccatgaagagagtctgaac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caaggtcttatcagaacactgaagaaaggacagtggagagcccatgaagagagtctgaac 271

                                                                       
Query: 121 cctgcctagaaagaccacttcaccgcccactctgccttctccagccctccatattagcag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 270 cctgcctagaaagaccacttcaccgcccactctgccttctccatccctccatattagcag 211

                     
Query: 181 gtacacacta 190
           ||||||||||
Sbjct: 210 gtacacacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no307_d03.g1 MSMg01no307_d03.g1 CHROMAT_FILE:
MSMg01no307_d03.g1 PHD_FILE: MSMg01no307_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:11 2005
         (214 letters)



>mm_chr2_92783350_92783963
          Length = 614

 Score =  375 bits (194), Expect = e-109
 Identities = 209/214 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacctgtagttctctacacttctcagacctcctgctagatgcttctagctgataagat 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tccacctgtagttctctacacttctcagacctcctgctaggtgcttctagctgataagat 260

                                                                       
Query: 61  gagaattagaagaggtcacagccatttcataatagccttaatggatggagcgtgagtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaattagaagaggtcacagccatttcataatagccttaatggatggagcgtgagtcac 320

                                                                       
Query: 121 ttcttctcatatccattggttggaaccttctcacttggccacactttgttgcagggcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttctcatatccattggttggaaccttctcacttggccacactttgttgcagggcatt 380

                                             
Query: 181 ttaggaaaggtgatttgttaggctgcctaccagg 214
           |||||||||||||  ||  |||||||||||||||
Sbjct: 381 ttaggaaaggtgacctggcaggctgcctaccagg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)