BAC Information

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BAC

Clone NameMSMg01-307D15
Chromosome2 (Build37)
Map Location 24,528,690 - 24,528,915
singlet/doubletsinglet
Overlap geneCacna1b
Upstream geneSh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307D15.T7 (MSMg01no307_d15.b1)MSMg01-307D15.TJ (MSMg01no307_d15.g1)
ACCAG431658AG431659
length733677
length of high quality
(start - end)
228 (132 - 359)47 (56 - 102)
definitionCHROMAT_FILE: MSMg01no307_d15.b1 PHD_FILE: MSMg01no307_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:13 2005CHROMAT_FILE: MSMg01no307_d15.g1 PHD_FILE: MSMg01no307_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTTCCAGAGACCCTGTCTCCCCCACAAAGGTGGGGATT
GATAAAGGAAGATAGATTTTTTACGTTGAACAATAGTCTCCACATGCATG
CCTTGACACAATTCATATGTGTGCACATGCTTGTGTACCCACCAAGCAAT
AGATTTAATCTAGGTTTTTTTGAACTTACATAAACTTGCACGGAGTATTG
GCTTAAATTGAACCCTCAGCCCCCTCTCCAGGGTTTCTCTGTGTAGCCAT
GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCTCCAACACCTGCCT
CTGCCTCTTTAGTGCTTTGCCCGCCCCCGCACCTGGCTTCAAGTGATTTT
TTTGGGTTTTGTGTTTCCTCTTTTATAAAAAAAAAAATGTTGTTATTTTT
AGAACTCCCATCTTTTCTGTGATTTCTCCCTTTTCTTGATTACATTAGTT
AGTGCTTTATACACTTTGTAATCTTTATAAAATGAAAATCAGTAGCTTAG
TTTATTTGACATTTATATCATGTTTATTGTAAAAATCATTTCTCATTTTA
TCTTTATTTTTCTCTTTTTGTTTTATATTTATATTATTAATAATTATATT
TATTTTTATCGTTCCTTTTCTAACTTCTTAATTTACATAATTTTGACATA
TTTTACCTCAAACTTGTATTCGTAGATTCCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATTGCTTATTGGGGGTATCAGAAAATCACAGCATTTGAGCTAGT
CCACCAAAGATCCACACGTGTAGAAATGGCCCTTCCCCTATATGATGTGT
GTAGAAATGGCCCTTTCCCCTATATGAAGTCTGAAGCAATCTTCCCAATG
GGATACCGGGTCCAAATTCTGGAAAGGTAAACCCCTGGGAAAAAAGGGGG
GGCCCTCCCCCCCCCCCGGGCCTATTAAAACCCCCCCCGCGGAAGAAAAT
TTCTCCCCAACTCAACACCACAAACCATATTAGAGAACTCATTTCACCCT
TATTAAAAATATAAAAATTTACAACTACTCAACTCCACACCAACACTGTC
TATTTTCTTTTTTTTTTCAAATAACACACACTCAAACTCCCCTTTTTCTC
CTCACCTCTTTGAATAGAAACCCTAAAAACCCCTAAACCACCCCCACATA
ANAACACAACACACCACACACGATTTTCCTTTTTTTTTTTTTTTTTTTTT
TCTTTTCAAACAAAAAGAAGAACATACCCCCCCCCCCCCCCCCCCCCTTT
TAACCNGCGATTTTCGAGGTTTACTAATATTTTCCCTCCCCATTATTGTA
TGTGCGCCTTTATTTCCCCCCACTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_d15.b1 MSMg01no307_d15.b1 CHROMAT_FILE:
MSMg01no307_d15.b1 PHD_FILE: MSMg01no307_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:13 2005
         (228 letters)



>mm_chr2_24528569_24529196
          Length = 628

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagtctccacatgcatgccttgacacaattcatatgtgtgcacatgcttgtgtaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aatagtctccacatgcatgccttgacacaattcatatgtgtgcacatgcttgtgtaccca 288

                                                                       
Query: 61  ccaagcaatagatttaatctaggtttttttgaacttacataaacttgcacggagtattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccaagcaatagatttaatctaggtttttttgaacttacataaacttgcacggagtattgg 228

                                                                       
Query: 121 cttaaattgaaccctcagccccctctccagggtttctctgtgtagccatggctgtcctgg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cttaaattgaaccctcaaccccctctccagggtttctctgtgtagccatggctgtcctgg 168

                                                         
Query: 181 aactcactctgtagaccaggctgtctccaacacctgcctctgcctc 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aactcactctgtagaccaggctgtctccaacacctgcctctgcctc 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)