Query= MSMg01no307_g01.b1 MSMg01no307_g01.b1 CHROMAT_FILE:
MSMg01no307_g01.b1 PHD_FILE: MSMg01no307_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:25 2005
(664 letters)
>mm_chr2_9850053_9851116
Length = 1064
Score = 1218 bits (630), Expect = 0.0
Identities = 660/680 (97%), Gaps = 16/680 (2%)
Strand = Plus / Plus
Query: 1 tgccaaagatatgtgctctggatgccggacaccgagaaacaaagctggaactgagcagta 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 185 tgccaaagatatgtgctctggatgccggacactgagaaacaaagctggaactgagcagta 244
Query: 61 ggctttataacttcctgccaactaccttcataatgcagaaagatgctatgcatgctgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggctttataacttcctgccaactaccttcataatgcagaaagatgctatgcatgctgttg 304
Query: 121 gtggataagggtcattaacaatcacatccaggtggacacc----------------tgtg 164
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 gtggataagggtcattaacaatcacatccaggtggacacctgtgtgtgtgtgtgtgtgtg 364
Query: 165 tgtgtgtgtgtgttgtatgcatgtttgcaggtgtgttgaggtcaagcttcttccacgact 224
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgtgtgtgtgtgttgtatgcgtgtttgcaggtgtgttgaggtcaagcttcttccacgact 424
Query: 225 gcttcttgaccgttttgtgacaaggtttcccactgaagctgggcctagaatttggctggc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcttcttgaccgttttgtgacaaggtttcccactgaagctgggcctagaatttggctggc 484
Query: 285 ctggatggctatcaggctgcagaaatccgcctccctcccctttccagacctaggattaca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctggatggctatcaggctgcagaaatccgcctccctcccctttccagacctaggattaca 544
Query: 345 gttgcacgccaacatgcccagcctttcacaagggtgatgggcatctgaactcagccctcc 404
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gttgtatgccaacatgcccagcctttcacaagggtgatgggcatctgaactcagccctcc 604
Query: 405 tgtttgcacactaagcactatgtccaccgtgctatcccccctgcctgattttctttcctt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtttgcacactaagcactatgtccaccgtgctatcccccctgcctgattttctttcctt 664
Query: 465 tacaaatacatctattttctagatctttcccttgtgaaggcctagaagttatgacattgt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tacaaatacatctattttctagatctttcccttgtgaaggcctagaagttatgacattgt 724
Query: 525 agtagcaatgggaacctctatagtgcggttcctcctccactgatagaatcaatgttctct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agtagcaatgggaacctctatagtgcggttcctcctccactgatagaatcaatgttctct 784
Query: 585 gaaggaatggttaatttgaggtctgtggaaatgaccagtaacacacaggaaatacatgaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaaggaatggttaatttgaggtctgtggaaatgaccagtaacacacaggaaatacatgaa 844
Query: 645 agctattcagcactaatgag 664
||||||||||||||||||||
Sbjct: 845 agctattcagcactaatgag 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_g01.g1 MSMg01no307_g01.g1 CHROMAT_FILE:
MSMg01no307_g01.g1 PHD_FILE: MSMg01no307_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:25 2005
(259 letters)
>mm_chr2_9937595_9938253
Length = 659
Score = 447 bits (231), Expect = e-130
Identities = 252/259 (97%)
Strand = Plus / Minus
Query: 1 acacacacacacacgcacacacgcacgcacgcacaccccctgtcttgaaaccagccttac 60
|||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 498 acacacacacacacacacacacacacacacgcacacagtctgtcttgaaaccagccttac 439
Query: 61 agctttagggccaaggccaaggctctcctgtgggttacattgctcccaagtcataaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agctttagggccaaggccaaggctctcctgtgggttacattgctcccaagtcataaccac 379
Query: 121 tgctgccctccaaaagtaacagagtagctacacttgctgtttaaagctttatgtgctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgctgccctccaaaagtaacagagtagctacacttgctgtttaaagctttatgtgctctt 319
Query: 181 atataaagtggtttttgttgcctgtcccaatagttcttaagtgtgtagctctcatattgc 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acataaagtggtttttgttgcctgtcccaatagttcttaagtgtgtagctctcatattgc 259
Query: 241 ttagtgtggaggttagcag 259
|||||||||||||||||||
Sbjct: 258 ttagtgtggaggttagcag 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
