BAC Information

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BAC

Clone NameMSMg01-308I04
Chromosome2 (Build37)
Map Location 117,158,289 - 117,158,576
singlet/doubletsinglet
Overlap geneRasgrp1
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308I04.T7 (MSMg01no308_i04.b1)MSMg01-308I04.TJ (MSMg01no308_i04.g1)
ACCAG432571AG432572
length722734
length of high quality
(start - end)
344 (64 - 407)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no308_i04.b1 PHD_FILE: MSMg01no308_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:50 2005CHROMAT_FILE: MSMg01no308_i04.g1 PHD_FILE: MSMg01no308_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGGAATTCACTCT
GTTTGCTTTGAGGGCCATTGTCTATCTTCTTAGTTGGCTGGTGGTTCTAA
ACCTGTGGTTCTCCACCTGTGGATCAAGACCCTTTTGGGGGCCAAATGAT
CCAGTCACAAGGGTCACCTAAGACAATCCAAATATCAAATATTTACATTG
TGATTCATAACAATAGCAAAATTACAATTATGAGTGGCAACAAAATTAAT
TGTATAGTCGAGGGTTACCACAACATGAAGAACTGTATTAATGCATTGCA
GCATTAGGAAGGGTGATAACCGCTGCTCTAGACACTGCCATTCAGAGCCT
CGGAGATGCCTTTCTGTTGGGTGAGTGCCCTATAGAGTCAGGCTTTCCAC
TGATGCCCCCCCCCCAGGTGGATGTTGTCAGTTTTCTATTAGCTAAGATG
TTGTCTTTTATGTCTCCTTCTCTTCTAGCCAGTTTCTTTGCTTGTGTTAG
CAGGTCTTCCAATGATGCACAAACACTAACTGAGGCCAGAAAGATGCTCA
AGATGGTGAGTGGCTGATTTTACAGAGAACTGGAGTTTAATTCTCTTCCT
TCACATATGACAGGACACAGGTACCTACATCTCCAGGTCCTGCGAGATCG
TACTCCTGCCCCTGCGACTCTGAGACACTCCCCGGTTTTGGGCTTATGGC
TGCGACACAGACACCGCACGAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTATTTCCCAATGAAAGCCTT
AAAGAATCTACTGGCAAACAGGTTCATCTGGCTGGTTGTTCAGGGCTTCC
CTCTGGCTCCTCCCAGCTCAGCCTCTTCTGGAAGGCCTGTGAGTCCAGGA
GGCTGGCTGGAGACAAGAATGGAGACCTTACTGTAGCATCAGGAATGGAT
CTGAACATCTTCCCACAGCAGCAAATGTAAGCCTGAAGAAAAGTCTTGGA
GAGCAATGAAGTACTGCCCCTATCCTTATAGTCCCAAGTGTAAGGCTGAC
AGGTTGTAAATTTTGTTGTTTTCTTCCCCCCCCCCCCCCAACATGCTCCC
AGGCAAAGAGTGTCTCTAACCCCCCCTCGCAAGAAAAAGATATTATGCTT
TCTGGCTTCCCCGAGAGCTTTATCGGTTTATAAATTGAAAAGCCTACTTG
CTCCATTGCTTCTCAGAGCTGTTTGTAGTTGGTTTTGTTTTCCTATAAAG
CCTAAGAACACGTTCTGGGATGTCCAAGGAGTAAGTGGCCTACTGGGCAA
GCGACGATCGCCATTACTTCCTGATGGCCTGCCTGTCTGACTAACTCTCT
TAGGATGATACTCTATTTTTTTCCATAGAACACAATCCTCTCACATCCGA
CCTGAACCTTTCGCCTCATACCTGGGCCAGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_i04.g1 MSMg01no308_i04.g1 CHROMAT_FILE:
MSMg01no308_i04.g1 PHD_FILE: MSMg01no308_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:51 2005
         (289 letters)



>mm_chr2_117158089_117158776
          Length = 688

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattatttcccaatgaaagccttaaagaatctactggcaaacaggttcatctggctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattatttcccaatgaaagccttaaagaatctactggcaaacaggttcatctggctggt 260

                                                                       
Query: 61  tgttcagggcttccctctggctcctcccagctcagcctcttctggaaggcctgtgagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcagggcttccctctggctcctcccagctcagcctcttctggaaggcctgtgagtcc 320

                                                                       
Query: 121 aggaggctggctggagacaagaatggagaccttactgtagcatcaggaatggatctgaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aggaggctggctggagacaagaatggagaccttactgtagcatcaggaatggatctgacc 380

                                                                       
Query: 181 atcttcccacagcagcaaatgtaagcctgaagaaaagtcttggagagcaatgaagtactg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctccccacagcagcaaatgtaagcctgaagaaaagtcttggagagcaatgaagtactg 440

                                                            
Query: 241 cccctatccttatagtcccaagtgtaaggctgacaggttgtaaattttg 289
           |||| ||||  | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccatcccca-agtcccaagtgtaaggctgacaggttgtaaattttg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)