BAC Information

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BAC

Clone NameMSMg01-309A22
Chromosome2 (Build37)
Map Location 173,433,882 - 173,434,176
singlet/doubletsinglet
Overlap geneLOC100043911
Upstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik
Downstream geneRab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309A22.T7 (MSMg01no309_a22.b1)MSMg01-309A22.TJ (MSMg01no309_a22.g1)
ACCAG432959AG432960
length721738
length of high quality
(start - end)
326 (46 - 371)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no309_a22.b1 PHD_FILE: MSMg01no309_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:32 2005CHROMAT_FILE: MSMg01no309_a22.g1 PHD_FILE: MSMg01no309_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGTATATACCAGGCTGGCCTTGAACTCAGAGATCCCAGTGCCT
CTGCCTCCCGAGTGCTGGGATTCCAGGTGTGTGCCGCCCTGCCTACTGGG
AGTGAGACTGGCTACTGATGATTGCTGTGTGTGCTTACCTCACCACTGAC
ACTAGCAACTTGAGGCAGGGAGGGTTCCTTTTGGCTCGGCTTGAAGTACA
GTCCATTCTGGCCAGAGGTTTCAGCAGCAGGATCGTGAGGTGACAGTCAC
GTGCATCTGCAGTTAGGAACACACACACAAAGAGAGAGATAAATGCTGGT
GCTCAGCTCATTGTTTTCCTTTGCCCCCCCCCCCAGACGTGTTTCCTTAT
TCCACCTCTGCACAGACGCCCCCCGACTGTAGAACTGTGTGACTCTGTGA
AACGGACCCTCAGAGCTGCCTCTGTTTCCTCTGACATGGAATGCAGATTT
CCCAGCAGCATCTGCGTGTGCAGGTGAGGGTTAACTAGACTGAGACACTC
AGAACAGAACCTGACATATACTGTGTGCTTATTAAATGCCAGCCTCTATT
ATTAATAACGATATTAATGTATCTAGTCCAAAGCACTATCAGGTGGTATC
AGCACCTATTTCATGTAAAGCCGTGTCTGCCTGTGCTCTTGGACGGATGG
ATCGTTTATGACCTCCCCGGN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGGAGTTGAACTACAGGCAT
GCACCATTCTCTGAGTTAGATGGTCACACGCTTATTCAGGAAAGTTTCAT
GGGTAACCTTGATTCTGTCTTTAGACATGCTCATTCTTGGAGTACCAGGG
CTGGAGGAGTCTCAGCCAAGTGAGTGCCAGTCACCAGCCACTTACACTGT
TGACACTGCTGCTGGGCGGGATGCCCGGTCTTACAGTAAAGCTCAGTCTA
GAGGCGTGGGGCCCACGATGGTGTATGAGGTAATGTGTTACACAGTACTT
AGTAAAAAAACCCTTTGCTACATCTAATGTGCTATATAAACATGTTAGAC
CAGGAGGGGTGTGAGCAGTAAGCACCCCCTGATGGGTGGGGTGGCAGCAC
ACTTGCAGGGGCAGAGGTGTGTGCTCAGGGGCCCTGCCAGCTTGGTTTTC
CATGTAGCATCCAGTGGTAGCAGGCTGCATACCACTATTAAGGGACTGTA
TAGGCAGCCAGGGCTTCCTCCTTCCTCCTTCTTCCTTGGTAGGTGGTGAG
CGTGCTGGCTTCTGCTGTACTTACCCAGTGCCCCAGCCCGGCCTTGCGTG
TTCTCTGTGTTCAGGGACCATCATGAGCCATCTCATTTCCTTTGGCAGCT
GCCCCTTCACTGCCCTGTACAGATGAAGCTTGTGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_a22.g1 MSMg01no309_a22.g1 CHROMAT_FILE:
MSMg01no309_a22.g1 PHD_FILE: MSMg01no309_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:32 2005
         (294 letters)



>mm_chr2_173433682_173434376
          Length = 695

 Score =  514 bits (266), Expect = e-150
 Identities = 288/296 (97%), Gaps = 3/296 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaggagttgaactacaggcatgcaccattctctgagttagatggtcacacgcttatt 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 495 tcacaggagttgaacttcaggcatgcaccattctctgagttagatggtcaga-gtttatt 437

                                                                       
Query: 61  caggaaagtttcatgggtaaccttgattctgtctttagacatgctcattcttggagtacc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 436 caggaaagtttcatgggtaaccttgatcctgtctttagacatgctcattcttggagtacc 377

                                                                       
Query: 121 agggctggaggagtctcagccaagtgagtgccagtcaccagccacttacactgttgacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agggctggaggagtctcagccaagtgagtgccagtcaccagccacttacactgttgacac 317

                                                                       
Query: 181 tgctgctgggcgggatgcccggtcttacagtaaagctcagtctagaggcgtggggcccac 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgctgctgggcgggatgcccagtcttacagtaaagctcagtctagaggcgtggggcccac 257

                                                                   
Query: 241 gatggtgtatgaggtaatgtgttacacagtacttagt--aaaaaaaccctttgcta 294
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 256 gatggtgtatgaggtaatgtgttacacagtacttagtaaaaaaaaaccctttgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)