Query= MSMg01no309_b24.b1 MSMg01no309_b24.b1 CHROMAT_FILE:
MSMg01no309_b24.b1 PHD_FILE: MSMg01no309_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:37 2005
(326 letters)
>mm_chr2_46639914_46640639
Length = 726
Score = 613 bits (317), Expect = e-180
Identities = 320/321 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtttttcattttccttatagggtggataatattccactgtgttcgtatgccat 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcagtttttcattttccttatagggtggataatattccactgtgttcatatgccat 264
Query: 65 attttcattatctatttatttgtctatttatttccactttctggcttccttaaatgtgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attttcattatctatttatttgtctatttatttccactttctggcttccttaaatgtgca 324
Query: 125 gccatgaagatagatgagtaggtgtctctacattaatgtaaatttatttaaaggctaagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccatgaagatagatgagtaggtgtctctacattaatgtaaatttatttaaaggctaagc 384
Query: 185 tattttcttcaatagatttcatagctttaaaactatgtttctcttttcaataacacttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattttcttcaatagatttcatagctttaaaactatgtttctcttttcaataacacttgt 444
Query: 245 attttttgatttttaaattttcttttctttttgatgaaatcaaaaatttttcatgttttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttttgatttttaaattttcttttctttttgatgaaatcaaaaatttttcatgttttc 504
Query: 305 aatatatttaaaattacaaga 325
|||||||||||||||||||||
Sbjct: 505 aatatatttaaaattacaaga 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_b24.g1 MSMg01no309_b24.g1 CHROMAT_FILE:
MSMg01no309_b24.g1 PHD_FILE: MSMg01no309_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:37 2005
(630 letters)
>mm_chr2_46801486_46802515
Length = 1030
Score = 1094 bits (566), Expect = 0.0
Identities = 593/602 (98%), Gaps = 3/602 (0%)
Strand = Plus / Minus
Query: 1 cattaacacaaaagcgtgacatagttgagatttatactgccagaaactctctttgattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cattaacacaaaagcgtgacatagttgagatttatactgccagaaactctctttgattta 541
Query: 61 taatctggtaatccttttatcctccatttatatgcagtataacttgatgtaagtgaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taatctggtaatccttttatcctccatttatatgcagtataacttgatgtaagtgaaaga 481
Query: 121 atgtctctgctaatagaattcacatatattggaccaagacatttttagatcataaaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgtctctgctaatagaattcacatatattggaccaagacatttttagatcataaaggct 421
Query: 181 gtgtgaaaaggggggaaagggaaaacgagagcctggtcatgatggatgatggggtctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtgtgaaaaggggggaaagggaaaacgagagcctggtcatgatggatgatggggtctggt 361
Query: 241 tttaacatggtctcataaaacggaattctggttacaaccactcagtttaaacaatttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tttaacatggtctcataaaacggaattctggttacaaccactcagtttaaacaatttgac 301
Query: 301 tggcatagcattccctgtagatgatattactccctaaactcagcccacataaagcatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tggcatagcattccctgtagatgatattactccctaaactcagcccacataaagcatttt 241
Query: 361 actagtcctgaaaccacaagcaagtttagacacttgtaactttataatagtttatattta 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 240 actagtcctgaaaccacaagcaagtttagacacttataactttataatagtttatatttt 181
Query: 421 aaaaaaaaagttacatgaacttgttaagtgtttgagagtgaagaaaagaataaaggaaca 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaaaaaaa-gttacatgaacttgttaagtgtttgagagtgaagaaaagaataaaggaaca 122
Query: 481 agaggagaacaagaatcacaagcatcttcctgagcttcagagaattctggaacagggaaa 540
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 121 agaggagaacaagaatcacaagcatcttcctgagcttcagagaatactgggacagggaaa 62
Query: 541 gctgagaacacctaagaccctttgcctaccttactg-gttctacagaatcgacgtctttc 599
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct: 61 gctgagaacacctaagaccctttgcctaccttactgcgc-ctacagaatcgacatctttc 3
Query: 600 ag 601
||
Sbjct: 2 ag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
