Query= MSMg01no309_c11.b1 MSMg01no309_c11.b1 CHROMAT_FILE:
MSMg01no309_c11.b1 PHD_FILE: MSMg01no309_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:39 2005
(526 letters)
>mm_chr2_28874534_28875459
Length = 926
Score = 754 bits (390), Expect = 0.0
Identities = 496/580 (85%), Gaps = 80/580 (13%)
Strand = Plus / Plus
Query: 6 aattcccagcacccacatcaggggtttacaactgcctgtaactcttctggactgtatgag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aattcccagcacccacatcaggggtttacaactgcctgtaactcttctggactgtatgag 268
Query: 66 cactctacacacacacacacaacacaacacacacacacgtttcatggctatcctgaaaaa 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 cactctacacacacacacaca---caacacacacacacgtttcatggctatcctgaaaaa 325
Query: 126 tgtagtaaccagccttcatggttttcccgtacatgcatgcatgaacacccaaaatatata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtagtaaccagccttcatggttttcccgtacatgcatgcatgaacacccaaaatatata 385
Query: 186 acacatgtccacacccaaaacacacacaccacacagacacacaaacaccacacactcaca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acacatgtccacacccaaaacacacacaccacacagacacacaaacaccacacactcaca 445
Query: 246 gagacacacaccctacacacagacacacaacacagacacacaacacatacacacaaacac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagacacacaccctacacacagacacacaacacagacacacaacacatacacacaaacac 505
Query: 306 caca--cactca-------------ta-------------------ta------------ 319
|||| ||| || || ||
Sbjct: 506 cacatacacacagagacacacaccctacacacagacacacaacacatacacacaaacacc 565
Query: 320 ------t-------acacacaccctacacacagacacacaacacagacacacaacacata 366
| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 566 acacactcacagagacacacaccctacacacagacacacaacacacacacacaacacata 625
Query: 367 cacacaaacaccacacactcacagagacacataccacttactccacacacacagagacac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cacacaaacaccacacactcacagagacacataccacttactccacacacacagagacac 685
Query: 427 agacacacagacacacacacacacacacacacacacacacacattttaaaagagatcatt 486
||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 686 agacacaca------------------cacacacacacacacattttaaaaaagatcatt 727
Query: 487 attaggattggaagacatgggcaagagctgagattcctgg 526
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 728 attaggattggaagacatgggcgagagctgagattcctgg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_c11.g1 MSMg01no309_c11.g1 CHROMAT_FILE:
MSMg01no309_c11.g1 PHD_FILE: MSMg01no309_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:39 2005
(655 letters)
>mm_chr2_28912755_28913809
Length = 1055
Score = 758 bits (392), Expect = 0.0
Identities = 404/408 (99%)
Strand = Plus / Minus
Query: 1 caggccagtttggcttacactgtgagttccaagccagttagggctacatagctctcataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caggccagtttggcttacactgtgagttccaagccagttagggctacatagctctcataa 349
Query: 61 tcagtagacatagtgaggacctggccctgtccgaaagtgcccttgacagttaatggttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcagtagacatagtgaggacctggccctgtccgaaagtgcccttgacagttaatggttgt 289
Query: 121 tgggaaccaagaggactttatgccatagtgtcagtcacccccacccatgcttaggtcagc 180
|||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 288 tggggaccaggaggactttatgccttagtgtcagtcacccccacccatgcttaggtcagc 229
Query: 181 aaccctaattgaattcagtggagcacaaaataagatctgaaagtggaagagggacttgct 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaccctaattgaattcagtggggcacaaaataagatctgaaagtggaagagggacttgct 169
Query: 241 gacaagaagagggagttcagcaattggggagagggagaaggaaaagatatgaacaaagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gacaagaagagggagttcagcaattggggagagggagaaggaaaagatatgaacaaagct 109
Query: 301 cattatacacatgcacaaaattattaaatgttttaagaaaaataccctcaaaagaaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cattatacacatgcacaaaattattaaatgttttaagaaaaataccctcaaaagaaaatg 49
Query: 361 ccctttatgcagggtgaagtctttagggtttccagcagtttgaatgag 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ccctttatgcagggtgaagtctttagggtttccagcagtttgaatgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
