TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTAACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCATAAGTATGCCCTAACTGGCAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATGTATAATAGCCAGAAGCTGGAAAGAACCTAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAA
CCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCA
AGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGCTTGTTTTTGATGAGTG
ATGTTGTTTTCTTTTATGACGTTCAGAAAAGTTTATTTGTAAGGGATAAA
CATGGTACAAGTAGATGAAAACTAGAAGTGTTTTCTTATTTTTTTTCTTT
AGTTCAAGGTTTTCTATGTAGCCCAGCCTGTTCCTGAATGTAAAATCTTC
TGTCTCAGCCCCTTAGGTACCTGTATTCATAGCTTCTCTCTGTCAACACC
TGGCTATTATCTCCTTTGGCATTCAGATATGAATCTAGGTATTTAGTGTT
GGATTTTGAAAGTTGGTAAATGCCTTAAAGAATATAGCATTAACTCTTTG
GTCTTCCTACAACCACCAAAACTAGACACTATTGTGGAAGCCAATAATAG
CTTGCTGACAGGAGCCTGATATAGCTGTCTACTGAGAGGCTCTACCAGTG
CCTGACAAATACAGAAGTGGATGCTCACAGCCATCCATTGGATGGAGCAC
AGGGTCCACAATGAAGGAGCTAGAGGAAGTACCCAAGGAGCTGAAGGGGT
TTTCAGTCCCATAGGAGGAACAATATGAACTAACTGGAATCTCCAGAGCT
CCCTGGGACTAAACTACCAACCAAAGAAAACACATGGTGAGACTCATGGC
TTTAGCTGCATATGTAGCAGAGAA

Query= MSMg01no309_e16.g1 MSMg01no309_e16.g1 CHROMAT_FILE:
MSMg01no309_e16.g1 PHD_FILE: MSMg01no309_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:50 2005
         (642 letters)



>mm_chr2_80869248_80870289
          Length = 1042

 Score = 1210 bits (626), Expect = 0.0
 Identities = 637/642 (99%), Gaps = 3/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaggcttgtttttgatgagtgatgttgttttcttttatgacgttcagaaaagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaggcttgtttttgatgagtgatgttgttttcttttatgacgttcagaaaagtttat 260

                                                                       
Query: 61  ttgtaagggataaacatggtacaagtagatgaaaactagaagtgttttcttatttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaagggataaacatggtacaagtagatgaaaactagaagtgttttcttatttttttt 320

                                                                       
Query: 121 ctttagttcaaggttttctatgtagcccagcctgttcctgaatgtaaaatcttctgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 321 ctttagttcaaggttttctatgtagcccagcctgttcctgaatgtaaaatct---gtctc 377

                                                                       
Query: 181 agccccttaggtacctgtattcatagcttctctctgtcaacacctggctattatctcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agccccttaggtacctgtattcatagcttctctctgtcaacacctggctattatctcctt 437

                                                                       
Query: 241 tggcattcagatatgaatctaggtatttagtgttggattttgaaagttggtaaatgcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 438 tggcattcagatatgaatctaggtatttagtgttggattttgaaagttggtaaatacctt 497

                                                                       
Query: 301 aaagaatatagcattaactctttggtcttcctacaaccaccaaaactagacactattgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaagaatatagcattaactctttggtcttcctacaaccaccaaaactagacactattgtg 557

                                                                       
Query: 361 gaagccaataatagcttgctgacaggagcctgatatagctgtctactgagaggctctacc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 558 gaagccaataatagcttgctgacaggagcctgatatagctgtctcctgagaggctctacc 617

                                                                       
Query: 421 agtgcctgacaaatacagaagtggatgctcacagccatccattggatggagcacagggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtgcctgacaaatacagaagtggatgctcacagccatccattggatggagcacagggtc 677

                                                                       
Query: 481 cacaatgaaggagctagaggaagtacccaaggagctgaaggggttttcagtcccatagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cacaatgaaggagctagaggaagtacccaaggagctgaaggggttttcagtcccatagga 737

                                                                       
Query: 541 ggaacaatatgaactaactggaatctccagagctccctgggactaaactaccaaccaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaacaatatgaactaactggaatctccagagctccctgggactaaactaccaaccaaag 797

                                                     
Query: 601 aaaacacatggtgagactcatggctttagctgcatatgtagc 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaacacatggtgagactcatggctttagctgcatatgtagc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)