BAC Information

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BAC

Clone NameMSMg01-309L09
Chromosome2 (Build37)
Map Location 61,641,962 - 61,642,249
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms1, ENSMUSG00000075325, Tank, Psmd14
Downstream geneTbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309L09.T7 (MSMg01no309_l09.b1)MSMg01-309L09.TJ (MSMg01no309_l09.g1)
ACCAG433418AG433419
length765736
length of high quality
(start - end)
311 (46 - 356)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no309_l09.b1 PHD_FILE: MSMg01no309_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:22 2005CHROMAT_FILE: MSMg01no309_l09.g1 PHD_FILE: MSMg01no309_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCCCAGGAATAATATCTATACATCTTAAGAGGTAAATTAGGAG
GCTAGAGAGAACTGGATTCAATTCCCAGTACTCACATGGCAGCTTACAAC
TTGTTTGTAATTCTAGTTCCAGAGACATCCAATGTTCCAATCCAAGGGCA
CCAGGTACAGATGTGTTACATAGACACACATATAGACAAAATACCTATAC
ACATAGATAATACAATATTGTTAAATAAAATAAATTTAGAAAGATAAATA
TAATGGAAAGTGAAGGATGTAAAAGATAGGTTAATTGAGAAGTTTTGATC
TCCGAGGTTATTTTTGTATCCCCCCCCCCCCCATTAGTTATATACAGATG
AAATATTTTTGACTCCCCCAAAAGAAAAAAAAAATGTATATTGAAGTGGT
AGATACTTTTGTTTGCTCCCCCACCCCTTTTTTCATCCCCTTATTATTAC
CTTACCCCCCTTCCCTTCTTTTTTCCCTCCCCCCTCCTTTTTTTTATTCC
CTCCTCCCCCCTTTTCCCATTTTTTTTTTTGTCTTTTATTCTTCCCTCAT
TCCTCACCTCCCCCTTATTCCCTTTTTCCCTTTTCTCCTTATCCCTTTTA
TTTTTCCTCGTTTTTTCGTACTCAACACTCTATTTTTCTTTTCCCTTCAT
CTCATACTTTTTCTTTTTCCCGCTCTTAATATCTATTACTCCCCTCCTCA
CTTATTTTCCTCTAT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATGCTAGGAGACTTTTCGGATC
TGAATGAGCCAAATATTCAGTTGAATGTAACGATTTCAAGTGCAAAGTAT
ACAAAGCGCGAGCCGGTGGCCTCTTCTCGCCCTGTAAAACTTCCAGAGTC
TGTCTTTTCCAGTTAATACACAGAAGCACACACACCTGAGCCTGTGCTTT
GTTGAATCGGTATTGCGTGTCCTTGCCGCCCCCTCCCCCACCTTTAAACT
ACACGAGTAAATAAATAAATAAACAAACCTCTGCCGCTGAAAGCCACAGC
GTTAAGAGAGGAGATTATTATGCAAAGCACCTACACCCACCCAGCAGCCC
ACCTCGGGAAGGTTCGGCTCCCGGCAGGGGTACAGAAACAGTGACAATCT
ATGATCTCCTTTTTAAGTTTTGAAATAATCATAAGCTGTCGCGCTGAAGT
GCTTTAATGTATTTGCAGTCATGTTTACTGGGTCGTTACTAAATATTTTA
TCAGCCAACTTGGTTGCAGATCATCTGAAGAGCAGCTAGCTGGGGGCGGG
CGCCATGTATCCTTTGAGCCCCATCGCACTTCCTCCTTTCCGAGACACTG
GCTTGTTGAAAGGTTCATAAGCCTCGCCAGAATAAAGAGAGGCTTGAGTC
CCCAGTTGCAATTGTTTTTTCTAAAAACTTTGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_l09.g1 MSMg01no309_l09.g1 CHROMAT_FILE:
MSMg01no309_l09.g1 PHD_FILE: MSMg01no309_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:22 2005
         (288 letters)



>mm_chr2_61641762_61642449
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgctaggagacttttcggatctgaatgagccaaatattcagttgaatgtaacgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgatgctaggagacttttcggatctgaatgagccaaatattcagttgaatgtaacgattt 429

                                                                       
Query: 61  caagtgcaaagtatacaaagcgcgagccggtggcctcttctcgccctgtaaaacttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caagtgcaaagtatacaaagcgcgagccggtggcctcttctcgccctgtaaaacttccag 369

                                                                       
Query: 121 agtctgtcttttccagttaatacacagaagcacacacacctgagcctgtgctttgttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtctgtcttttccagttaatacacagaagcacacacacctgagcctgtgctttgttgaa 309

                                                                       
Query: 181 tcggtattgcgtgtccttgccgccccctcccccacctttaaactacacgagtaaataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcggtattgcgtgtccttgccgccccctcccccacctttaaactacacgagtaaataaat 249

                                                           
Query: 241 aaataaacaaacctctgccgctgaaagccacagcgttaagagaggaga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaataaacaaacctctgccgctgaaagccacagcgttaagagaggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)