BAC Information

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BAC

Clone NameMSMg01-311A23
Chromosome2 (Build37)
Map Location 60,737,648 - 60,810,305
singlet/doubletdoublet
Overlap geneRbms1, ENSMUSG00000075325
Upstream geneBaz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6
Downstream geneTank, Psmd14, Tbr1, LOC100039274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311A23.T7 (MSMg01no311_a23.b1)MSMg01-311A23.TJ (MSMg01no311_a23.g1)
ACCAG433670AG433671
length731739
length of high quality
(start - end)		322 (46 - 367)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no311_a23.b1 PHD_FILE: MSMg01no311_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:48 2005CHROMAT_FILE: MSMg01no311_a23.g1 PHD_FILE: MSMg01no311_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,737,648 - 60,737,966)(60,810,068 - 60,810,305)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGTTGTCATCTTTTGGTTGTCCTCTTTTGTCCCCTCTCGTCCC
TATTCCATATTTTTAAAAGATATGATCTTGTCCACAGAAATCATAATGAT
CTCCACTGGTTCAAAGAAGTCTATCTATATGGTTCTAAGGTTAGCTTTTT
GATTGGAAGCCAAATTCACTGGTCATGGTCAAACTCTCTTGAGTTTTTGT
GTCTCCACATCATAATCTATCTATGTATCTGTGTATCTACCTATGTATCT
ATGGATCTATCTATCTACCATCCATCTAGCTAGCTAGCTCTATCTCTCTA
TCATCTATATATCATCTATCTATATCTCTATCATCTATCTATCTACCATC
CATCTCTATATATCATCTATCTATATATATGTATCCATTTCTATCACCTA
TCTGCCCATCTATTTGTCTACCTCTATCTAATCTATCATCTATTTAATCT
ATCATCTTATCTATCATCTATTATCTAATCTACCATCTTATCTATCATCT
ACTACCTACTATCTATTATCTATCTTTCCATCTAATCTAATATCCTATCT
ATCTATCTCTCTATCATCTCTCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCATCTCTCTATCTACCTCT
ATCATCTATCATCTGCCTCCCCTTGATATAT

ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCTCTAGACAGATTTACAATC
TTGCTTATGCTCCAATATCCTTTAGACCGAGAGGGCCACAGACATGGAAA
GGTTCATGCAATCCTAAGAACATAATTTGATGGAGAATAATATCCCCTGA
GGTGCAGGTGAACAGCTTAGCATCGTTCTAATGGAAAGCCACCACACTGG
GGTGAATTTTAGGGTCCCACTGTTGTTCAGTATCTCCTTTCAGTGTTGAA
ATGAAATTGGGAAAGTTCTCAATTCTGGGAAGATAGAAAATATGACATGA
TTATTTATGCTTATTACTCTTTTTTGGAAATTTAACGCGTTCTTAGAGAC
ATATGTGGAACAAAGCATTTTAATACAAAAAATGAGAAGGAGACCTTAAT
GTATGTTCAGAAATTAAAATTGTCCCTACCAACACAATAGGAGGAATGAT
ATGACAGAAATAAAAACAAGCAAATGGGCCTGAGAACACTGTGAAACAAG
TCAAAGATACTGATACCAATACATCAATAGGGATTTTTCTTACTCCCTTT
TAAACAGCAGTACAACACTGCAGTCCTTTAAAGGAAGGTAGACTACAGGA
CCTTGGCAGAGCGTATGAGACAGCACCTTCAGCTGAATCATAATGCTGCG
TCACAATGCAGTCGATTACAGGAGACCTAGAGTGCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_a23.b1 MSMg01no311_a23.b1 CHROMAT_FILE:
MSMg01no311_a23.b1 PHD_FILE: MSMg01no311_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:48 2005
         (322 letters)



>mm_chr2_60737445_60738166
          Length = 722

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaagttgtcatcttttggttgtcctcttttgtcccctctcgtccctattccat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagttgtcatcttttggttgtcctcttttgtcccctctcgtccctattccat 263

                                                                       
Query: 64  atttttaaaagatatgatcttgtccacagaaatcataatgatctccactggttcaaagaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttttaaaagatatgatcttgtccacagaaatcataatgatctccactggttcaaagaa 323

                                                                       
Query: 124 gtctatctatatggttctaaggttagctttttgattggaagccaaattcactggtcatgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctatctatatggttctaaggttagctttttgattggaagccaaattcactggtcatgg 383

                                                                       
Query: 184 tcaaactctcttgagtttttgtgtctccacatcataatctatctatgtatctgtgtatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaactctcttgagtttttgtgtctccacatcataatctatctatgtatctgtgtatct 443

                                                                       
Query: 244 acctatgtatctatggatctatctatctaccatccatctagctagctagctctatctctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctatgtatctatggatctatctatctaccatccatctagctagctagctctatctctc 503

                              
Query: 304 tatcatctatatatcatct 322
           |||||||||||||||||||
Sbjct: 504 tatcatctatatatcatct 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_a23.g1 MSMg01no311_a23.g1 CHROMAT_FILE:
MSMg01no311_a23.g1 PHD_FILE: MSMg01no311_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:48 2005
         (239 letters)



>mm_chr2_60809868_60810506
          Length = 639

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggccacagacatggaaaggttcatgcaatcctaagaacataatttgatggagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agagggccacagacatggaaaggttcatgcaatcctaagaacataatttgatggagaata 379

                                                                       
Query: 61  atatcccctgaggtgcaggtgaacagcttagcatcgttctaatggaaagccaccacactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atatcccctgaggtgcaggtgaacagcttagcatcgttctaatggaaagccaccacactg 319

                                                                       
Query: 121 gggtgaattttagggtcccactgttgttcagtatctcctttcagtgttgaaatgaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggtgaattttagggtcccactgttgttcagtatctcctttcagtgttgaaatgaaattg 259

                                                                     
Query: 181 ggaaagttctcaattctgggaagatagaaaatatgacatgattatttatgcttattac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggaaagttctcaattctgggaagatagaaaatatgacatgattatttatgcttattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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