BAC Information

Click to search

BAC

Clone NameMSMg01-311C11
Chromosome2 (Build37)
Map Location 85,450,397 - 85,450,737
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000
Downstream geneOlfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C11.T7 (MSMg01no311_c11.b1)MSMg01-311C11.TJ (MSMg01no311_c11.g1)
ACCAG433735AG433736
length740730
length of high quality
(start - end)		322 (45 - 366)349 (77 - 425)
definitionCHROMAT_FILE: MSMg01no311_c11.b1 PHD_FILE: MSMg01no311_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:55 2005CHROMAT_FILE: MSMg01no311_c11.g1 PHD_FILE: MSMg01no311_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTACTGCCCCTGGTATTACACTATCACTTTGAGTAAAAGTTAGGT
CACTGCCCTTCACAGGAATCTACCATCACCAAGGAAGAAAGAAGTTTCAG
ACCAAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGGAGTTACACC
CATACACACGTATTTACAATGGCCTAAGGGGAAGGTGGACTATACGATAG
ACTAAAATAGGAACTATGGCAAGGGCACGAAGCCCTTGATCCTGGCTTCT
AAGATTGGTGAATATTAGGTGGAGTCCTTGTTGATCCCAGTTGTTAACAA
TGAATTCTATCCCTTTTGTTTCCCACCCCCCCCCCTGTGTTTGCATTCCT
CTGTTTTATGTAAGATTCCACCCACCNCAAAAAAACTTGTGGTTATGTCA
CCCAACTTCCTTATTGTCTTCTGCATATAAAGACTGATGCTCGATTTGAC
CACATACGTTCCTATCCCACACTACCTCTCCTGTGTGCATCTGTCTGTCT
ATCCATCCAATGGCTTGGTCTCCCATGACTAGATACCCGTTTCCCGTCCA
CAACGGGTCTCCTCAGTACCTGCCGGCATATTTCAACTACAAGCCACACC
GATAATCACCCCTTTCACTTCCCTTCTTGCCCCAACATTCTCATATTTAC
CTTGAGCTAGGACCAATATTCTTAGCATGTTTCCTGTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACCAATCACACACTGGATTTAT
TTTCTCTTTTCATTGAAGGATCATTATTAAATGAAAATCATATGTTTTAT
TATTCTTCAGGATAGTCATCCTTTTTGCCAAGTATGTATTTATCTTTCAC
ATATCTCTTTATAATGAGGAAATGAAGCAGACTGAAATACACACAAATGA
ATTATACTTTACATTAGTTTCATATTGGTCATTATTTAGTAAGAATTGGG
TGCCATATTTAACATTTCCCTAATATATGATGTAGCATGCTAAACATGCA
GTTGTAGTTATAGTGTTCCTAATAAAAGTATTCCCAAGTAGGATTTTATA
ACTGTGTGCATGCATGCATGCCACCGCACATGTGTGTCTCTATGTATGTA
TATTCATGTGCATGTTAGATATGTGCATATGGATGCCAGAGGAAAACCCC
AACTGCTATTCTGTACTGTCCATCTTGAATTTGCAGAGTAGGTCTCCAAT
GATATGGCTTACCATGTGGGAAAAACCAATTGTTGAGTTATCCCAAGGGA
TTCCTGTTCTCTCTGTCACTCCTGACCTGGGATAATATGTACATATCATC
AAGTCTAACTTATAAAATGGGAATTCTAGGGAGCAAATTTCAGTACTCAA
ATTTGTACGCCAAGGAATTATAATACCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c11.g1 MSMg01no311_c11.g1 CHROMAT_FILE:
MSMg01no311_c11.g1 PHD_FILE: MSMg01no311_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:56 2005
         (349 letters)



>mm_chr2_85450197_85450946
          Length = 750

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaccaatcacacactggatttattttctcttttcattgaaggatcattattaaatgaaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acaccaatcacacactagatttattttctcttttcattgaaggatcattattaaatgaaa 482

                                                                       
Query: 61  atcatatgttttattattcttcaggatagtcatcctttttgccaagtatgtatttatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcatatgttttattattcttcaggatagtcatcctttttgccaagtatgtatttatctt 422

                                                                       
Query: 121 tcacatatctctttataatgaggaaatgaagcagactgaaatacacacaaatgaattata 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcccatatctctttataatgaggaaatgaagcagactgaaatacacacaaatgaattata 362

                                                                       
Query: 181 -ctttacattagtttcatattggtcattatttagtaagaattgggtgccatatttaacat 239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctttacattagtttcatattggtcattatttagtaagaattgggtgccatatttaacat 302

                                                                       
Query: 240 ttccctaatatatgatgtagcatgctaaacatgcagttgtagttatagtgttcctaataa 299
           ||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttctaatatatgatgtagaatgctaaacatgcagttgtagttatagtgttcctaataa 242

                                                    
Query: 300 aagtattcccaagtaggattttataactgtgtgcatgcatg 340
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 241 aagtattctcaagtaggattttataactgtgtgcatgcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 750
Length adjustment: 9
Effective length of query: 340
Effective length of database: 741
Effective search space:   251940
Effective search space used:   251940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |