Query= MSMg01no311_e02.b1 MSMg01no311_e02.b1 CHROMAT_FILE:
MSMg01no311_e02.b1 PHD_FILE: MSMg01no311_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:03 2005
(598 letters)
>mm_chr2_42210380_42211377
Length = 998
Score = 1112 bits (575), Expect = 0.0
Identities = 587/591 (99%)
Strand = Plus / Plus
Query: 8 ttcactgtaaatctccagaataagtacttcagacttatccttccctagaccattgtcctt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcactgtaaatctccagaataagtacttcagacttatccttccctagaccattgtcctt 267
Query: 68 ctttaggggtggcatcatagtactttcagatctgctgacctctttgctattgtggtcaga 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctttaggggtggcatcatagtactttcagatctgctgacctctttgctattgtggtcaga 327
Query: 128 gaccacattaaattctagactttttatctgtatagaacctaccctcatgctcacaaatat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaccacattaaattctagactttttatctgtatagaacctaccctcatgctcacaaatat 387
Query: 188 tatgtaaaatagttactattactatgtatttacagcttaagctttatggtatacctggaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tatgtaaaatagttactattactatgtatttacagcttaagctttatggtatacctggaa 447
Query: 248 ttagaataactatgggaattattgttacctggagacccttttcaaattctattgtgttta 307
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 448 ttagaataactatgggaattattgttatctggagacccttttcaaattctattgtgttta 507
Query: 308 agtatgtctacaataaaccacctggtattagacttctagaagcctgacccaggttgatga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 508 agtatgtctacaataaaccacctggtattagacttctagaagcctgacccagggcgatga 567
Query: 368 agtatttctatactagagtttcattctcatttctttgggaattcacggccttgtctgaat 427
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 568 agtatttctatactagagtttcattctcatttctttgtgaattcacggccttgtctgaat 627
Query: 428 acctgcatggttcccctcccaaacctagcattgacttcagccattgagaataatagaaaa 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acctgcatggttcccctcccaaacctagcattgacttcagccattgagaataatagaaaa 687
Query: 488 tagaggtatacaagggacaagatatgtaaaataagcatgatatgcaaaccccacagtgtg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tagaggtatacaagggacaagatatgtaaaataagcatgatatgcaaaccccacagtgtg 747
Query: 548 ttaaaatcacagcattaaacagtcagttaacataaagggcgtgtgattttt 598
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttaaaatcacagcattaaacagtcagttaacataaagggcgtgtgattttt 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_e02.g1 MSMg01no311_e02.g1 CHROMAT_FILE:
MSMg01no311_e02.g1 PHD_FILE: MSMg01no311_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:03 2005
(540 letters)
>mm_chr2_42372050_42372988
Length = 939
Score = 969 bits (501), Expect = 0.0
Identities = 528/537 (98%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 1 catggcaacgggaaccttttggtcatattgttaaccttggcttttacaccactctctgct 60
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 736 catggcaacgggaaccttttggtcatattgttaaccttggctttgacaggactctctgct 677
Query: 61 ggactcagttaagggagactcccagaatgcctgctgaatgttatttcatgttttgtcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggactcagttaagggagactcccagaatgcctgctgaatgttatttcatgttttgtcact 617
Query: 121 tgtaattgcacatgtcagtgacaatttaaaaaatctagccgacaccactgaattatgtgg 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 tgtaattgcacatgtcagtgacaatttaaacaatctagccgacaccactgaattatgtgg 557
Query: 181 tgtatataaatcttccatatcaggtagattttaaattgatactatcaagctaagagtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtatataaatcttccatatcaggtagattttaaattgatactatcaagctaagagtgga 497
Query: 241 ataaagaagccaccctcgacgcccaatagctggaaatgattttatgtttcattattttag 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 496 ataaagaagccaccctcgacgcccaatagctggaaatgattttatgtctcattagtttag 437
Query: 301 aaatgtgatcttacccacccactttaaaaataaaaagtgcatgaacatatttcttctggg 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 436 aaatgtgatcttacccacccactttaaaaataaaacgtgcatgaacatatttcttctggg 377
Query: 361 ataagttgttaattatatgggagaaagaggtcacctgatgaggtaaaaatctctgaaaat 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 376 ataagttgttaattatatgggagaaagaggtcacctgatgaggt-aaaatctctgaaaat 318
Query: 421 ttgctactggatatttgatttgattgtaattaatatgattatgtctaattggaatgctca 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 317 ttgctactggatatttgatttgattgtaattaatatgattatgtttaattggaatgctca 258
Query: 481 gctactaaagatggaagattgataggttaatttatctatacttgttagtaaaatccc 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gctactaaagatggaagattgataggttaatttatctatacttgttagtaaaatccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
