Query= MSMg01no311_e03.b1 MSMg01no311_e03.b1 CHROMAT_FILE:
MSMg01no311_e03.b1 PHD_FILE: MSMg01no311_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:03 2005
(322 letters)
>mm_chr2_87984287_87985017
Length = 731
Score = 470 bits (243), Expect = e-137
Identities = 301/325 (92%), Gaps = 9/325 (2%)
Strand = Plus / Plus
Query: 5 gaattccacatttctacaaagtttatagtggcctataagtgaaatgtccatactaagggt 64
||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct: 205 gaattccacatttctccaaagtttatagtgacctatacgtggaatgtccatactaagggt 264
Query: 65 tagaaaggcatcaggc----tgttacatgtctataaagacaaattgtacag-----aaaa 115
|||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct: 265 tagaaaggcagcaggctgtttgttacatgtccataaagacaaattgtacagaggaaaaaa 324
Query: 116 aaaatgaactgaacatggatctgggtaatgatgggtaaaatataatacagaaaaagcagt 175
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 325 aaaaagaactgaacatggatctgggtaatgatgggtaaaatataatacagaaaaggcaat 384
Query: 176 gacacttctggtatcacattggaatgagtgtctaatccacgtttcagaagatttcagtcc 235
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 gacacttctggtatcacatttgaatgagtgtctaatccacatttcagaagatttcagtcg 444
Query: 236 tccaaagaagaggagaaggaagaactgtaggggccagaggggtcaaggacaccagaagaa 295
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 tccacagaagaggagaaagaagaactgtaggggccagaggagtcaaggacaccagaagaa 504
Query: 296 cacagctcatagaatcaactaaaca 320
|||||||||||||||||||||||||
Sbjct: 505 cacagctcatagaatcaactaaaca 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 731
Length adjustment: 9
Effective length of query: 313
Effective length of database: 722
Effective search space: 225986
Effective search space used: 225986
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_e03.g1 MSMg01no311_e03.g1 CHROMAT_FILE:
MSMg01no311_e03.g1 PHD_FILE: MSMg01no311_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:03 2005
(498 letters)
>mm_chr2_88262200_88263097
Length = 898
Score = 901 bits (466), Expect = 0.0
Identities = 489/498 (98%), Gaps = 3/498 (0%)
Strand = Plus / Minus
Query: 1 acctgagagctgctagcttgctcacttataaatgtcagaagctttatgagcggtcccagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 570 acctgagagctgctagcttgctcacttataaatgtcagaagctttatgagtggtcccagt 511
Query: 61 tattggcacaaatgatgaatttgtggacagtcacagttttaggcacctacaatggattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tattggcacaaatgatgaatttgtggacagtcacagttttaggcacctacaatggattta 451
Query: 121 tgaatgataacaggtttaggatgaatatctgagcttgtctctttaaatatcctcagcttg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgaatgataccaggtttaggatgaatatctgagcttgtctctttaaatatcctcagcttg 391
Query: 181 tagaaacactgaataagaaaatatattttttcttcttctcagtaaaacttatttagttga 240
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tagaaacactaaataataaaatatattttttcttcttctcagtaaaacttatttagttga 331
Query: 241 ggagttctatgtgtagcatgtttcagaaaaagcaacacatgccagattgtctgaatacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggagttctatgtgtagcatgtttcagaaaaagcaacacatgccagattgtctgaatacat 271
Query: 301 ttacatgataaaggattctgttctattctgatcaaattcattaacacacaaaataatgtt 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 270 ttacatgataaaggattctgttctattctgatcaaattcattaacatataaaataatgtt 211
Query: 361 atgcattgcggtctttttttttttttttttttcttccagagctgaggactgaacccaggg 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 210 atgcattgcggtctttttttttttttttt---cttccagagctgaggactgaacccaggg 154
Query: 421 ccttgtgcttgttaggcaagtacactaccactgagctaactccccaactctgcattgcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccttgtgcttgttaggcaagtacactaccactgagctaactccccaactctgcattgcag 94
Query: 481 tcttttgatacacatagt 498
||||||||||||||||||
Sbjct: 93 tcttttgatacacatagt 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
