BAC Information

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BAC

Clone NameMSMg01-311G01
Chromosome2 (Build37)
Map Location 84,694,552 - 84,694,839
singlet/doubletsinglet
Overlap geneSlc43a1
Upstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10
Downstream geneRtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311G01.T7 (MSMg01no311_g01.b1)MSMg01-311G01.TJ (MSMg01no311_g01.g1)
ACCAG433897AG433898
length836746
length of high quality
(start - end)
163 (45 - 207)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no311_g01.b1 PHD_FILE: MSMg01no311_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:13 2005CHROMAT_FILE: MSMg01no311_g01.g1 PHD_FILE: MSMg01no311_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTTCTTGGACCATGGGCCACTCCTCCCACTGAAGTCCAACAAGG
CCATCCTCTGCTACATATGCACCTGGAGCCATGGGTCCCTCCATGTGTAC
TCTTTGGTTCGTGTTTTAGTCCCTGGGAGCTGTGGGGGGGGGGGGGTCTA
GTTGGTTGATACTATTCATTTTCCCTTCCTCTCTGCTCAGGTTGTGTCTC
CGTTCTTTCTGTCCTCTTTTCTTCTTGGTCCCTTCCAGCTTTATACTTAA
GGAATCTTACAGTGCTTCTTTTTTTACCGATTTCCGCACGGCGAACAGCG
AAAAGCCGTTTGGGTGGGTATTCCCCCCCCCCCCCCCCCCTTTTTTTTTT
TTTATAGAAGGGGGTTGTGCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAA
AACTGCGGGGGGGGGGGGGATTTGTACCCTTTCTTTCCTATTATACATTC
CGATCTTTCTTCTCTGTTTATTCTTCTCTTCCTTTTACTCATTTCTCATC
CTTAACTCCCGCCTATCTACCATACCGAATCTTTACCTTATCTCGCTTCC
TTTATTTCTCCCTTGTTTATTTCATATTTCTCATTTCCATTTTATACCTG
ATCCATACCCTTGCCTTTCTTTTTTTCTTTTATATTTCTCCCTGTTCTGG
CCCTCATTCGTCTCTACTCCCGCCATCCGCTGTCCGCCTCTTTATTTCGT
TTCTTCCTTACTTATTTCTCCCCTCTCCTGCGTCTTTTGTTTCCTTATTC
CCTCTCCATTACCCCGTTAGCACCTTTGCCTAAGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCCACGTGTGACGCCGAAGC
CAATTCTGTCAATCACATCATCATAGCCCTGGCCTCAACCCTCTACAGCA
GGGGTCAGGGGTCGGGGGTCGAGAATCCGCTTCACACTCCAACCTCCTCT
CCCAGCCTCTCACGTGTAGTCAACTTCCTCAGGGGCAGGAAAGGCTTCTG
CAGGCCAGTTGAGAGCACAGTTCAAAAAGATGAGACAGGCCAGGCCAGAC
CATGTGAACATGATGACAGTGAAGGGGACTCCGGCATCGTAGATCAGCTG
TTGGGGAAGAACAGGTATTTAGGAAGCCAGCTTGCCCGGGCCCCACAAAG
GCAGAACCCTTGGAGAACTGCAGCCTTGCGACGCGATCCTTATACCCAAT
TTGAAGGTGGGGAAACCAAAGCCAGAAATCAAAAGTAAGACCCAGACCGC
CTGCCATTCCCTTTCTTCACCCAAGCCCCATTAAAGGAGTGTGAAGCCAT
TCTTTAAAAGTGCTGAAGGTGCCTGCCACACCCTTCACAAGCCTTGGGAC
TCTCAACTACTACCTTGGATAGGAATGCCAATTTTTGCCCATGACTCCGT
AAAAATATTCCCACACCCACAAATGTTATTTCTTATCATATGCTCCAGGG
AAAATAATGCTCCCAGCCTAACCTTCCTCTGGGTAAGAAACTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_g01.g1 MSMg01no311_g01.g1 CHROMAT_FILE:
MSMg01no311_g01.g1 PHD_FILE: MSMg01no311_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:13 2005
         (288 letters)



>mm_chr2_84694352_84695039
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacccacgtgtgacgccgaagccaattctgtcaatcacatcatcatagccctggcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 caaacccacgtgtgacgccgaagccaattctgtcaatcacatcatcatagccctggcctc 429

                                                                       
Query: 61  aaccctctacagcaggggtcaggggtcgggggtcgagaatccgcttcacactccaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaccctctacagcaggggtcaggggtcgggggtcgagaatccgcttcacactccaacctc 369

                                                                       
Query: 121 ctctcccagcctctcacgtgtagtcaacttcctcaggggcaggaaaggcttctgcaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctctcccagcctctcacgtgtagtcaacttcctcaggggcaggaaaggcttctgcaggcc 309

                                                                       
Query: 181 agttgagagcacagttcaaaaagatgagacaggccaggccagaccatgtgaacatgatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agttgagagcacagttcaaaaagatgagacaggccaggccagaccatgtgaacatgatga 249

                                                           
Query: 241 cagtgaaggggactccggcatcgtagatcagctgttggggaagaacag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cagtgaaggggactccggcatcgtagatcagctgttggggaagaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)