BAC Information

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BAC

Clone NameMSMg01-311I05
Chromosome2 (Build37)
Map Location 53,571,143 - 53,571,457
singlet/doubletsinglet
Overlap genenone
Upstream geneStam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311I05.T7 (MSMg01no311_i05.b1)MSMg01-311I05.TJ (MSMg01no311_i05.g1)
ACCAG433994AG433995
length736773
length of high quality
(start - end)		320 (45 - 364)211 (77 - 287)
definitionCHROMAT_FILE: MSMg01no311_i05.b1 PHD_FILE: MSMg01no311_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:23 2005CHROMAT_FILE: MSMg01no311_i05.g1 PHD_FILE: MSMg01no311_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCCATGGTTCTTAATATCCTGGTGAAGGGAGTTTAATAAATTC
CCCCTTCAAAAAAATGTTGCTTCTTCTTCTCCTCTTTGTTTACTAATTGT
ATAGATCTGAACAAGAGAGAAACAAGGTTTGAATCAAGTCATCAACTTTC
ATATGTGGTAGTTGCTTAAAAGGTACTGTGAAGATGAGTTTGAATCCTGA
GCAGATTCTTTGTCTATTACCCCTGCCTCCTCTAAGCATGGGCATCTGTA
TCCAGTTCTGACCACCTTCTAACTGGCTAGTCACTTGCTCAAAAATACCT
TTCATCAGCATCATATTTTAGAATCCAAGGCCATCAACACAGCAGGGAGG
AATCAGATTCATTTTTTTGCCAAGTACCCTTATGACCCAGAAGAGCANAG
AGTCTATTTGGAGACTTCTCTTGGGCAATTCCTCTCTGTCTCTCATCTCC
AAAACGAGGTATTTTAGTTACTATTATTTAGGGTAATTCAGGCATGATTA
ATGGTTTTGGGGTTTATATTTATCTTGCTGCTTGCATAAAGTCAAAATAG
TATGGATAAAAGAAAAGAGAATATCATCAAGTTTACTATAGTTTTAAGAT
AAAATTAGTTTATAAAAGCAAACAGAANAAGCTTTTGGAGAGGAACTGCC
CGCTATGCTATACTTCACGTTAACAAATAGCTAGAA

TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTATGGAGTCCACCTTCTTGAGTTCTTTAT
ATATCTTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGGGTCTTTTGCCTT
ACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTA
CAGCACCAAGACATTGGGTGGTTCCGGGTTAAGAATTTTTTTTCTTGGGG
GTCCCCTCCCTTCTCTTCCTTGGCGGGGTGGTTCGTTTCTTTCCTTTATC
CTCCTCGGCCGTTCTGTCGTTTGTTCTTCTCTCTTTTGTTTTCGATTATT
CACCTTTTATGTATTTAACCCTCTCTTCTTTTTTTTTTGCTCTGTTTCCC
TCCTTTTTTCCTTTTTTCTTTCTTTCTTGTCCCTTTTGCTTCGACATCGT
GGCTTTTCACCTTGTTTTATTCCTTCTTTTGGTTCTTTTTTCCCACTTCT
CCTCTCTTTTTTTCTTCCCGTGTTTTCTCATTTATATATATACCCCTTCT
TTTCATTCGTTCTCTTCCCTATTTCTTCTTTAGTTCTCCTTCTTAATATT
TTCTGTTTATTTCTCCCCCCTCGTTTTTGCCCCCTCTTATTTCCCTCACT
TTACTCTTTTCTTTATTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_i05.b1 MSMg01no311_i05.b1 CHROMAT_FILE:
MSMg01no311_i05.b1 PHD_FILE: MSMg01no311_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:23 2005
         (320 letters)



>mm_chr2_53570939_53571658
          Length = 720

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcccatggttcttaatatcctggtgaagggagtttaataaattcccccttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctctcccatggttcttaatatcctggtgaagggagtttaataaattcccccttca 460

                                                                       
Query: 65  aaaaaatgttgcttcttcttctcctctttgtttactaattgtatagatctgaacaagaga 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 459 aaaaaatgttgcttcttcttctcctctttgtttgctaattgtatagatctgaacaagaga 400

                                                                       
Query: 125 gaaacaaggtttgaatcaagtcatcaactttcatatgtggtagttgcttaaaaggtactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaaacaaggtttgaatcaagtcatcaactttcatatgtggtagttgcttaaaaggtactg 340

                                                                       
Query: 185 tgaagatgagtttgaatcctgagcagattctttgtctattacccctgcctcctctaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgaagatgagtttgaatcctgagcagattctttgtctattacccctgcctcctctaagca 280

                                                                       
Query: 245 tgggcatctgtatccagttctgaccaccttctaactggctagtcacttgctcaaaaatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgggcatctgtatccagttctgaccaccttctaactggctagtcacttgctcaaaaatac 220

                          
Query: 305 ctttcatcagcatca 319
           |||||||||||||||
Sbjct: 219 ctttcatcagcatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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