BAC Information

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BAC

Clone NameMSMg01-311P17
Chromosome2 (Build37)
Map Location 50,198,259 - 50,198,548
singlet/doubletsinglet
Overlap genenone
Upstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P17.T7 (MSMg01no311_p17.b1)MSMg01-311P17.TJ (MSMg01no311_p17.g1)
ACCAG434327AG434328
length737746
length of high quality
(start - end)
319 (46 - 364)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no311_p17.b1 PHD_FILE: MSMg01no311_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005CHROMAT_FILE: MSMg01no311_p17.g1 PHD_FILE: MSMg01no311_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGTGG
GATTGCAGTCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTTAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCTAACCGGCACCAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTACCACACCCAGAAGAAGAAAAGAACCCAGATG
CCCCCAAAAGAAGAATGGATAGAGAAAATGTGGTACATTTACAAAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTAAGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAAAAAGG
AACTCACACAGTATGTACTCACTGATAAGTGGATATTAGCCCAAGACTTA
GGATACCCAAGATATAAGATACAATTTGCTAAGCACATGAAACTCAAGAA
TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGN
AATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATCTTCAACTGTCCTGACATC
TTAGGATCAATTTTTCCTTCCTTCCTTCCAGAACCATTGGTAGGATTGAC
ATGGAATATTTTTGCAAAGGAGAAAGCTTTAAAAGAAAATTAAAGTTTTT
AAATTATATTTATTTAACCTTTCAAAAGCTAAACGTCTCACATCTTGTTT
TTAAGACATATCGTAAGAGCGCCTTTATGTTTTGATGTGTCCTTTTCAAG
CCTAAATTTATTAAAAACATTCTTGCTTGGAATATAGTCTATGTTTATGA
AATATACAGTACTTGATTGAGTAATTTTACCCCCCCCCCCACTGAAATGT
TGAATTATGTAANATTAAATATACCCCCCCCACAAATCATNAAAAACNGG
GGGGGGGCGGGGAANGTTGAATTCTGTCTGAAAGGTATGGGATGATGAGG
CTCATGGTTTAATCAAAACTGCATTCTATTTACTAATCTGTGAAGTCACA
TGCCTTTTCATTATCCCTGATAAGTCTCAAACCTTGCTATCGTGGTTTTC
CTTCTCACAGATGGCATCAAATAAGGCCACTTAAGTGCGAATTATGAGGA
AATAAAGATAACATTATGGTCTAAAAATTCCCCAGCGTTTATTTATTACA
ACAACAATATTAGAGTTTGAGCATCGTCTTCCGATTTCCCGTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p17.g1 MSMg01no311_p17.g1 CHROMAT_FILE:
MSMg01no311_p17.g1 PHD_FILE: MSMg01no311_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:58 2005
         (293 letters)



>mm_chr2_50198059_50198751
          Length = 693

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatcttcaactgtcctgacatcttaggatcaatttttccttccttccttccagaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatcttcaactgtcctgacatcttaggatcaatttttccttccttccttccagaacca 260

                                                                       
Query: 61  ttggtaggattgacatggaatatttttgcaaaggagaaagctttaaaagaaaattaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtaggattgacatggaatatttttgcaaaggagaaagctttaaaagaaaattaaagt 320

                                                                       
Query: 121 ttttaaattatatttatttaacctttcaaaagctaaacgtctcacatcttgtttttaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaaattatatttatttaacctttcaaaagctaaacgtctcacatcttgtttttaaga 380

                                                                       
Query: 181 catatcgtaagagcgcctttatgttttgatgtgtccttttcaagcctaaatttattaaaa 240
           ||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 381 catatcgtatgagcgcctttatgttttgatgtgtccttttcaagcctaagcttattaaaa 440

                                                             
Query: 241 acattcttgcttggaatatagtctatgtttatgaaatatacagtacttga 290
           ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 acattcttgcttggaatatagtctatgtttatgaaatatacagtatttga 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)