BAC Information

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BAC

Clone NameMSMg01-312D02
Chromosome2 (Build37)
Map Location 126,932,890 - 126,933,098
singlet/doubletsinglet
Overlap geneNcaph
Upstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra
Downstream gene1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D02.T7 (MSMg01no312_d02.b1)MSMg01-312D02.TJ (MSMg01no312_d02.g1)
ACCAG434479AG434480
length740844
length of high quality
(start - end)
267 (42 - 308)152 (72 - 223)
definitionCHROMAT_FILE: MSMg01no312_d02.b1 PHD_FILE: MSMg01no312_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:13 2005CHROMAT_FILE: MSMg01no312_d02.g1 PHD_FILE: MSMg01no312_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCAAGGTGTGACTGTGGATAGTGGACCATATGCCCTAGCAGCTGCGTG
CCAAGGCATTAGCTTGCTGTGTGACCTGCCCCATCCTCTGCTGGGACAGT
CTCTTCTTCCAAGCCACGGTGATGTCTGTTTTAAACTGTGACTGCATCTC
TCTGCTTTAGGTTGTTGACCACACTGAGGGATCATGAGCTGTAGACATCA
GCTCTCCCTTCCTACACATTGTGAACCTAAGGAGCATGAGTGATGTTACC
TCTGTGTCAGCCTCCTTCTTATTAAACTTCTTCAGCAGACTCCACATACT
CTGTTTTTTGAGTCANATTCCAAAAACAAAACCCTTAGAAATTGTGATAA
AGAATTTTCTATTTTACCCCCCCGAAAATAAAAAAAAAAAAATCATTTGT
GTTCGTGAATTAATTCCTTTTACTACCTTTTTCCTGCATTACAGAATTCT
CTACTGAAATTTCTTTATATATCGGATATATCCCATTCTTTCACTGTTTT
TCCCTCTTTATGATTTTTGCCCTTTGTATCCTATTCTTCCGTTTCACATT
TCATTCATATACCAAACATGTTTCTACATTTAGTATCTTTTTTATTTCCT
TATTTTTCTTCTGTTTTCCTCGTTTTTTCTCCTTTTTCTTACCATTATTC
CCTTCCCCTTTTCTCCCTTTTTTCCTTATTTTTACCTCCA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTACATAGTGAGACT
TTGCCTCAGAATAAAGTTAACTAAAATTTAAGAACAAAAGCAAAAGCCAA
ACAAACAAACAAACAAAAATAAGATTAGAGTTTTTTCAGCTACTACTGAT
ATGAGACATATCTTGAAATATGACATAAACTAGTTCATGGCATTTTTGGA
GCAGTTAGTTAATGGCAAAATACTAAAAACAAATCCAACAAATCTCAAGG
TCCATTTATGCTGTCTCGATAATCTATTGCCTTGTCCGTACGAGACCCCA
ATCTGACTGTTTTGATGAATCTTCCCAAACGGAACCCCCCATTTTTTTCT
CTAACTTAGTAACACCTCTGTTTCTCCCCCAACGAAAAATAAAAAAAATT
ACCCCTTCGGGGGGGGGGGGGTCTTTTCCTAAGGCCAAATTTGCCCCAAT
ATCTCTCCTTCGCTGAAAGATTCGAATCATCATTCTTCCAATTCTTTTAT
GTCACACCAAAGCACACTTTCCAACCATTCTACATTTTCTCATCTCTTCC
TCCTTTTTACCTCCTTTTCACTTATGCGTGCTCTCCTCCTAGGTAATACA
CTCTTTGCCCACACAACAGGCATTTTTAGTCGTTTATCCCCGAATTGTTT
TTATATACCGCCTTATTCCTGTATTATTTTCTTTGTCATATATACTTCTC
TGTTTCTCCTTTTTTCTTTTACCTAACTCACGCGTCTGCTGTCTTTTCTT
ATTTTACATCACTTTTACTATATTATCATCATCCACGTATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d02.b1 MSMg01no312_d02.b1 CHROMAT_FILE:
MSMg01no312_d02.b1 PHD_FILE: MSMg01no312_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:13 2005
         (267 letters)



>mm_chr2_126932632_126933298
          Length = 667

 Score =  366 bits (189), Expect = e-105
 Identities = 204/209 (97%)
 Strand = Plus / Plus

                                                                       
Query: 59  gccaaggcattagcttgctgtgtgacctgccccatcctctgctgggacagtctcttcttc 118
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 259 gccaaggcattagcttgctgtgtgacctgtcccatcctctgctgggacagtctcttcttc 318

                                                                       
Query: 119 caagccacggtgatgtctgttttaaactgtgactgcatctctctgctttaggttgttgac 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||
Sbjct: 319 caagccacggtgatgtctgttttaaactgtgactgcatctctctgctttagggtggggac 378

                                                                       
Query: 179 cacactgagggatcatgagctgtagacatcagctctcccttcctacacattgtgaaccta 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 379 cacactgagggatcatgagctgtagacatcagctctcccttcctacacattgggaaccta 438

                                        
Query: 239 aggagcatgagtgatgttacctctgtgtc 267
           |||||||||||||||||||||||||||||
Sbjct: 439 aggagcatgagtgatgttacctctgtgtc 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)