BAC Information

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BAC

Clone NameMSMg01-312M03
Chromosome2 (Build37)
Map Location 13,983,454 - 13,983,897
singlet/doubletsinglet
Overlap genenone
Upstream geneRsu1, Cubn, Trdmt1, Vim, St8sia6, Ptpla
Downstream geneStam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312M03.T7 (MSMg01no312_m03.b1)MSMg01-312M03.TJ (MSMg01no312_m03.g1)
ACCAG434886AG434887
length732733
length of high quality
(start - end)
194 (128 - 321)453 (74 - 526)
definitionCHROMAT_FILE: MSMg01no312_m03.b1 PHD_FILE: MSMg01no312_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:54 2005CHROMAT_FILE: MSMg01no312_m03.g1 PHD_FILE: MSMg01no312_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTTTTACATAAAGACTGGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATTAGATCCATGCAAATCAAAACAACTTTGAAATT
CTACCTTACACCAGTCAGAATGGTTAAGATCAAAAATATATGTGACAGCA
AATGCTGGCGAGGATGGGGAGAAAGAGGAGCACCCCTCCATTGCTGATGG
GATTGCACGCTTGTACAGCCACTCTGGAAGTCAGTCTGGATGTTCCTCAG
AAAATTGGACATAATACTATTTTATTATCCAGCAATACCTCTCCTGGGCA
TAAACCTATTATAATTTCTTCCCGNACTAACCCCACATGCCCCACTATGT
TCATAGCAGCCTTATTTACAATAAACNGAAGAAAAAAATAACCCAGATGT
CCCTCAACAGAGGAATGGATACAGAACATATGGTACTTTTACATAATGGT
GTACTACTCAGTTATTAAAAACAATGAATTTATGAAATTCTTGGACAAAT
GGATGTATCTGGAGGATATCATCCTGACTGAGGTAACCCAATCACAAAAT
AGGTCATTAGATATGCACTCTCTGATAAGTGGATATTAACCCAGAAACAT
AGAACACCCTTGATACAATTTGCTCATCACTATAAACACATGAAGGAAGA
GCAATTCGTGGACACTTTATTCCTCCTTATAN
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGAACTTTCATGGGACCCATGAAGT
TTCTTTGCCCACTGATGAAGACCCATTGGGGATTAATATCTGCTGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGTTAGTCTTCCTGCACCCAATACCAGTGGCCAACATTAAAACAT
ATGTATCCAAGCAACATGAAATCGACTCTGTGGGTTGAATTTTTATATTT
ATTTTTGATATGTACGTAATATCTATAAAAAGAGGCTGTGAATTTGAGAA
GAAGCAGGGAGGTGGGGAGGCTTGAGAAGGATTTAAGGAAGGAGAGAAAA
GGGAGAAATGATGTAACCCCATTTTGGTTATGAATAAAATGGGGGGGGGC
ACTGGAGAGATGGCTTGGCAGTTAAGACAACTGGCTTCTTTCTCTTCCAG
AAGCCCTGGGTTCGATTCCCAGCACCCATGTGGCAGCTCACAACTGTTTC
TATCTCCAGTTCCAGTAGTTCTGACATCCTTACTCTGTATCTATGCTGGT
AATATACCCATGCACGAGGAGCATAACCTACAGAATTTTTTAAACTATAA
TCTAAGAGGCCCGTAAGATGTATGGATTCGGAGGCCGGTGGATCTGGAAT
GTTGACATGATCAAACCCTTTTATTGATCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_m03.g1 MSMg01no312_m03.g1 CHROMAT_FILE:
MSMg01no312_m03.g1 PHD_FILE: MSMg01no312_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:54 2005
         (453 letters)



>mm_chr2_13983339_13984191
          Length = 853

 Score =  714 bits (369), Expect = 0.0
 Identities = 428/455 (94%), Gaps = 13/455 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaactttcatgggacccatgaagtttctttgcccactgatgaagacccattggggat 60
           ||||||||||||||||||||||||||||||||||||||| |||||||| ||         
Sbjct: 559 agtgaactttcatgggacccatgaagtttctttgcccacagatgaagagcc--------- 509

                                                                       
Query: 61  taatatctgctgagag--agagagagagagagagagagagagagagagagagagagagag 118
             ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 --atatctgctgagagaaagagagagagagagagagagagagagagagagagagagagag 451

                                                                       
Query: 119 agagagagagagagagttagtcttcctgcacccaataccagtggccaacattaaaacata 178
           ||||||||||||||| ||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 450 agagagagagagagaattagtcttccttcacccaataccagtggtcaactttaaaacata 391

                                                                       
Query: 179 tgtatccaagcaacatgaaatcgactctgtgggttgaatttttatatttatttttgatat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgtatccaagcaacatgaaatcgactctgtgggttgaatttttatatttatttttgatat 331

                                                                       
Query: 239 gtacgtaatatctataaaaagaggctgtgaatttgagaagaagcagggaggtggggaggc 298
           ||| |||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtatgtaacaacaataaaaagaggctgtgaatttgagaagaagcagggaggtggggaggc 271

                                                                       
Query: 299 ttgagaaggatttaaggaaggagagaaaagggagaaatgatgtaaccccattttggttat 358
           ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||
Sbjct: 270 ttgagaaggatttaaggaaggagagaaaagggagaaatgatgtaatcatattttggttat 211

                                                                       
Query: 359 gaataaaatgggggggggcactggagagatggcttggcagttaagacaactggcttcttt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaataaaatgggggggggcactggagagatggcttggcagttaagacaactggcttcttt 151

                                              
Query: 419 ctcttccagaagccctgggttcgattcccagcacc 453
           |||||||||||||||||||||| ||||||||||||
Sbjct: 150 ctcttccagaagccctgggttcaattcccagcacc 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)