BAC Information

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BAC

Clone NameMSMg01-313M04
Chromosome2 (Build37)
Map Location 20,502,506 - 20,503,053
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313M04.T7 (MSMg01no313_m04.b1)MSMg01-313M04.TJ (MSMg01no313_m04.g1)
ACCAG435595AG435596
length1,2701,282
length of high quality
(start - end)
816 (43 - 858)335 (511 - 845)
definitionCHROMAT_FILE: MSMg01no313_m04.b1 PHD_FILE: MSMg01no313_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:50 2005CHROMAT_FILE: MSMg01no313_m04.g1 PHD_FILE: MSMg01no313_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCTTTTNNNNNNGGCACTGGGCGCTAAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCTTAAACACAGAAGGCCTGTCTACTTCACTCTACTCTGTA
CTTCTCATGACTTCTTCCTGAATTGAAGCCTCCATGATTCATCTTAGTGA
TGACTGCAACATGCTGCCCCATTCCCCACTTCCAGCCCATCTCTACCTGA
GGCCAGTGGCTTTTCTAAAAATGAATCTGATCATGTTGTTCTTTTCTAAA
ATTCTTGTCTCAGTGTAAAGTCTAAGTTGTTCTACATTCCCGTACTTCTG
CTCATTGTCTCTCCATGCCTTGTAAATACTTATGAATGCCAATTCATCCT
ATTAAAGCTATGCATGAGTTCTGTAGTGGTTCATGTTCACTGTCTGCATG
GCTGAACTCAGAATCACCTGGGAAATTGATGAGACACACTTCCGGCTATG
CTTGTTCTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTAAAGAAGCAAG
CCCATTACAAACAATGGTCTCTGCCTGTCTGCCATGCAATGAGTTAACCT
CCTCTGCTGTACGTTCCTGTCCTGCCACCACACTCTGCCCAAGTGCCAGG
ACCAAGCAAGTATAGACTATACCTGTTCAACCAATAAACCAAAAGAAATC
TCTCCTTCTTTGTTTGCTCACAGATTTGATCACAGCAATGACGTAACAAA
ACAATACAGGTCCCTTGGGCTTTTGTCACTTCCAGTAGAGATCCATGGCT
TCTCTTTCAAGTGTTTGTGTATGCTTTGCTATGTACTTGGATGTCAATAT
GCCTCACCTATTGAACTTGTCTGTAAAAACAATCTTCCATGTAAAGATGT
CTTTTCTCTGAAAGTTCCCTGACTCCACAGTGTGGCTTAAGGGACCCGTC
TGGCTGTTCATGTGTCACTAGCTTCTTGCTTTATTACGAAATGTCTTCTT
TCTCTGAACAACCTGTTATTTGCAGTCTCCCCTAAATCGAAGGCTTCTCT
TGTTCCTTTCAACCTTTCTTCCCCATTAACAAAAAGATTTAAATTAAAAT
CCCTCCAGGTCTCCTTAATGGAAGAATGACAAAAAATTTTTTAAGACTTC
CCCTTTTCAATGCCACAATAAAACCCCACCCCCGCCAAAAACCCTCTAAA
AATCTTCCCCTCTCTCCCCCCCACGTTATGTGGGGGTTATTATTTTTTCC
TTTTCCAAACAAATAACCTGGGGAATAAATAACTTTCTTTTATTTCTATC
CCCTACATATAATATAACAC
NNCCCGAANNNNNGGATCATGTGAGACTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCTGGAAGTCTAGAAC
TCTGGAAGGTGGCAGGCACAGCTTGGCTCACTGTAGGGTAAAAGGGGTAA
ACCATGCAGGCTGCAGTTTTCACTTACAAGTTGCCACCTGCTATCCCTGT
TTCCAGACATGGTTTGTGGTGACCAAGTGGCAGATCTGAGTACATGAAAG
AAACCTGATAAAAAACTGGACGTCAACTAAGTCTTACTTAGAAAGGACAT
GTGCTTCCGGGGCACAGTGAGGTCAGATTTAGCTTTGTTATGTAACTGTA
CAAGGAATACATGTGGAAGAACACAAGATATCCCCAACCATCTACAAAGC
AAAGCAATGTGTTACGGGACACTTTTGTTGCGGCCGGCCAGCAGCTCGCA
ACGTGAACGTTTTTTTTTGACCCCCCCACTCGAGCTAAGGGAGGAACTAA
ACAAGGAGAAAGAAGAAACGGAGCCAAGACAAGTTCATCCTGTTCAAAGC
TCAATTTTACTAGTACCGACATTCAGTTATAAAGGAAGGGGGAGGGAACC
CGATTCCCGCCAACTGGTCTCGGGGTCCAGTAGCAGGGTAAACACCTGTG
TGGCTCCGAACAGCAAAGCGGCAGGTTCCAGCAGTGGGCATGGCAGAACG
ATTGAGCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAG
GGGAGGCTACAACTTGAACTCCTTACTTCTTAAATGGCAGGATGCTGGGA
TTTCCAGGCCATGCAGCAAGGCAAACTTAGAGGCCATGCTCAAGGTACGC
CCACTTGAACTCTAGCTGAGGAAGGGCCCACCCTTGTTTTCATTAGTGGG
TAAAATTCATCCACAGAACGTTAGCTGAGAAGCGCAAATAGACTTTTCAA
GAACCCTTCCCATTTGGCAACCTGAAAAACACATGNNGGCCTGTCTTGAA
TTGCATACGGGTGACCATCTGTGGCTGGTTTACTGGGGGACGATCCTCAG
GTTCTAATTGGTCACATTCTGAATGTTCTTAGAACACTCCCCTCCTTCCC
AAAAAGGCCTCGGGCTTTTGTATTTAAAAAAAAAAGGCCCCGGAAACTTC
CTCAAATATTTGTTGCCCAACCAAGCGGGAAGAAAAATAGCTTTCCCCCC
CCCGGGGGTTCTCTTTTCCACGGGTTTCCCCCGTGGAAAAAATCATCCCC
CCTCCCGGGAGGAGAGCACCCCCCCTCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_m04.b1 MSMg01no313_m04.b1 CHROMAT_FILE:
MSMg01no313_m04.b1 PHD_FILE: MSMg01no313_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:50 2005
         (816 letters)



>mm_chr2_20501843_20503053
          Length = 1211

 Score =  667 bits (345), Expect = 0.0
 Identities = 477/553 (86%), Gaps = 61/553 (11%)
 Strand = Plus / Minus

                                                                        
Query: 320  gcatgagttctgtagtggttcatgttcactgtctgcatggctgaactcagaatcacctgg 379
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1211 gcatgagttctgtagtggttcatgttcactgtctgcatggctggactcagaatcacctgg 1152

                                                                        
Query: 380  gaaattgatgagacacacttccggctatgcttgt---------t--ct-------t---t 418
            ||||||||||||||||||||||||||||||||||         |  ||       |   |
Sbjct: 1151 gaaattgatgagacacacttccggctatgcttgtaagcatgactccctagaggactcact 1092

                                                                        
Query: 419  ---t-----t--tg--ttttttt----------tgtt----t-------ttttttttttt 445
               |     |  ||  | |  ||          || |    |       ||||| |||||
Sbjct: 1091 aaatacccatcctgaatatgattggaaaaagactggtgacataaacaggtttttgttttt 1032

                                                                        
Query: 446  tt--aaagaagcaagcccattacaaacaatggtctctgcctgtctgccatgcaatgagtt 503
            ||  ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 ttaaaaaaaagaaagtccaatacaaacaatggtctctgcctgtctgccatgcaatgagtt 972

                                                                        
Query: 504  aacctcctctgctgtacgttcctgtcctgccaccacactctgcccaagtgccaggaccaa 563
            |||||||||||||| ||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 971  aacctcctctgctgcacgt-----tcctgccaccacactctgcccaagtgccaggaccaa 917

                                                                        
Query: 564  gcaagtatagactatacctgttcaaccaataaaccaaaagaaatctctccttctttgttt 623
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 916  gcaagtatagactatacctgttcaaccaataaaccataagaaatctctccttctttgttt 857

                                                                        
Query: 624  gctcacagatttgatcacagcaatgacgtaacaaaacaatacaggtcccttgggcttttg 683
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 856  gctcacagatttgatcacagcaatgatgtaactaaacaatacaggtcccttgggcttttg 797

                                                                        
Query: 684  tcacttccagtagagatccatggcttctctttcaagtgtttgtgtatgctttgctatgta 743
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 796  tcacttccagtagagatccatggcttctctttcaagtgtttgtgtatgttttgctatgta 737

                                                                        
Query: 744  cttggatgtcaatatgcctcacctattgaacttgtctgtaaaaacaatcttccatgtaaa 803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  cttggatgtcaatatgcctcacctattgaacttgtctgtaaaaacaatcttccatgtaaa 677

                         
Query: 804  gatgtcttttctc 816
            |||||||||||||
Sbjct: 676  gatgtcttttctc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 816
Length of database: 1211
Length adjustment: 10
Effective length of query: 806
Effective length of database: 1201
Effective search space:   968006
Effective search space used:   968006
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)