BAC Information

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BAC

Clone NameMSMg01-313P13
Chromosome2 (Build37)
Map Location 82,371,030 - 82,371,352
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550
Downstream geneLOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P13.T7 (MSMg01no313_p13.b1)MSMg01-313P13.TJ (MSMg01no313_p13.g1)
ACCAG435745AG435746
length1,2771,217
length of high quality
(start - end)
748 (124 - 871)323 (136 - 458)
definitionCHROMAT_FILE: MSMg01no313_p13.b1 PHD_FILE: MSMg01no313_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:17 2005CHROMAT_FILE: MSMg01no313_p13.g1 PHD_FILE: MSMg01no313_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATATNNNNNNGAACACTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCTTTGTTCAGTTCTGACCCTTATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACTTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCTATCTGTTGGTGG
TCTTTTTGTCTTATTAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAA
GTCAAAATATCACATTTTGCAGATGATATGATAGTATATATAAGTGACCC
TAAAAATTCTACCAGAGAACTCCTAAACCTGATAAAAAGCTTCGGTGAAG
TAGCTGCATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACA
AAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAAT
AGTCACAATTTTTATAAAATATCTTGGCGTGACTCTAACTAAGGAAGAGA
AAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAA
GATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA
CATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAA
TCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATT
TGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGNCAAAAGTCTTCT
CAAGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTT
ACTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGA
CAAGTAGACCAATGGAATAGAATTGAAGACTCAGAAATGAACCCACACAC
CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA
AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTTTTATCGGGT
TAAAAAAAGGGAATCCATCCTTATTTATTTTCCTTGGATAAGGGTCAACC
TAAGGGGTGTCAAAAATTTCTCTTAAACCCAGAACCTTGAACTTTTTTAA
TAAAAAGGGGGGAAAAACCTTGTATATTTGGTCCTTGGGGAAAAATTCTG
AACAAAAAACAATGTTTGTGGTTGAGAAACAAAATTATAATGGGTCCCTC
TGAACTCCAAATTCTTTTTGGGAAAAACCCCCACTCTTTAATTTTTTTAT
CTGATTATTCCCCGCTTTATTTAAATC
CATTTTCNNNNNTTTAGAAGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATTTTTAGAGACAGCTAAAG
TGACATTGATTTACCCCTTTATATTATGTAAGTCCCTGAAATATATATAC
AATGCATGCTTAAAGACTGAATACAGAAGAAATGCTTGACCTAAATAAAG
CTAAACCTATAAAAAATTCAGATCAAAATTAATACACCTTTGAGTTATGG
CCCATTGTGTTCAAAAAAGTATCTTGCTTAGATTGAATTACTTTTCTTCA
TAGGGACACTGAGAAGTTATGTTTTATTCAGCAGGAATAAGCAATTTCCA
ATCCAATAGACACATACCAGACTCTAGGACTACAGAAGACATTAATAAAT
AAGGTGTATACAAAATTCTTTTGCAAGAATTCAATGTTAAATAACATTGA
AAGAGATATGTTTTTATAAATTTACAGTAATAAATTTATGAAGTTTATAT
AATTCTTGACTATAATAGTAATTATAAGAGCCTTTAAAAAGAATACCTAC
AAGAGAGCCGGAGACTAGCAAACACAGAATTGGATGCTCACAGTCAGCTA
TTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAG
GAGCTAAAGGGATCTGCAATCCTATTGGAGGAACAACAATATGAACTAAC
CAGTACCCGCCCGGAGCTCATATCTCTAGCTGCATATGAATCAGAAGATG
GCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTT
ATATGCCTCAGTACAGGAGAAAGCCAGGGCCAAGAAATGGGAGTGAGTGG
NTAGGGGAGTGTGGTGNTNNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTNTTTTTTTTNTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTATNTTTNTTTNTTTTTTTTTTTTTCTNTTTTTCTTTTTTT
TNTTTTTTTGTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p13.g1 MSMg01no313_p13.g1 CHROMAT_FILE:
MSMg01no313_p13.g1 PHD_FILE: MSMg01no313_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:18 2005
         (323 letters)



>mm_chr2_82370830_82371552
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaatatatatacaatgcatgcttaaagactgaatacagaagaaatgcttgacctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctgaaatatatatacaatgcatgcttaaagactgaatacagaagaaatgcttgacataaa 260

                                                                       
Query: 61  taaagctaaacctataaaaaattcagatcaaaattaatacacctttgagttatggcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagctaaacctataaaaaattcagatcaaaattaatacacctttgagttatggcccat 320

                                                                       
Query: 121 tgtgttcaaaaaagtatcttgcttagattgaattacttttcttcatagggacactgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgttcaaaaaagtatcttgcttagattgaattacttttcttcatagggacactgagaa 380

                                                                       
Query: 181 gttatgttttattcagcaggaataagcaatttccaatccaatagacacataccagactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatgttttattcagcaggaataagcaatttccaatccaatagacacataccagactct 440

                                                                       
Query: 241 aggactacagaagacattaataaataaggtgtatacaaaattcttttgcaagaattcaat 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggactacaaaagacattaataaataaggtgtatacaaaattcttttgcaagaattcaat 500

                                  
Query: 301 gttaaataacattgaaagagata 323
           |||||||||||||||||||||||
Sbjct: 501 gttaaataacattgaaagagata 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)