BAC Information

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BAC

Clone NameMSMg01-315L04
Chromosome2 (Build37)
Map Location 11,973,061 - 11,973,402
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919
Downstream geneLOC667247, Itga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315L04.T7 (MSMg01no315_l04.b1)MSMg01-315L04.TJ (MSMg01no315_l04.g1)
ACCAG436266AG436267
length731733
length of high quality
(start - end)
578 (45 - 622)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no315_l04.b1 PHD_FILE: MSMg01no315_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:15 2005CHROMAT_FILE: MSMg01no315_l04.g1 PHD_FILE: MSMg01no315_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCCATCCCTAAACATGATAAAAGCAATCTACAGCAAACAGTA
GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGAAAAGGCTGCCCAATTTCTCCCTACCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTAA
TAAGCAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCA
ATGGCCTTTCTCTATACAACCAATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGA
CTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTG
AAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC
ATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAA
TCTACAGATTCAATGGAATCCCCATCAAAATTCCAACTCAATTCTTCAAC
GAATTAGAAAGAGCAATCTGCAAATTCATCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAGAATCCAGGCTGGAGATAAA
CTCACAGCAAACATCTTTGAGTTGTCTGCTTTGTCATCTTTGCTAATGGA
CAAAACAAGTTATTGGAAAACCTGGAGGAAACAACACAGAACTTAAGGAA
AATCAAGAGAGAAATAAAAATGGGATTCAAGGTGTTAATCTTTTAACCCA
GGAATAGTATACACAGTGTGGAAGATTACCCACAAGGAAGGCTCCTGAAA
ATATTCTAGAACACAGAGTGAAGATCCTACAAGAGGCATGAGAAGTTGCT
TAGCAAGCCCTTGCTATCTAAGAGAGAGATTAAAAACTGCTATTCTTTGA
TTAGTAAAGAAATTCCTTCCCCCCCCAAAGGACAGCTATAACTTCCAGCT
GACTATTTGTATTTATAAGTCTGTCGACAGACACAGACATTTGGGCAACC
TCCACTGTGGCTGTTTATGTAAAAACTAGCCTTAGTTATGGGTCAAGAGC
CGACTTCCCTATAAGATGATGGCCCATGTGCCGCCCCAAAAGCAGTAGTT
TCGTTCAGACTTGGGAGAATGTGTGCAGAGATGTGGCGCGCTCGAAGCTG
TATTAACACAATGATCTCGGCATGCTTTTCAACTTCTGTGAAGACTTTGA
CTAAGAAAGCCATGTCGTTTAAAACAACGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_l04.g1 MSMg01no315_l04.g1 CHROMAT_FILE:
MSMg01no315_l04.g1 PHD_FILE: MSMg01no315_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:15 2005
         (342 letters)



>mm_chr2_11972861_11973602
          Length = 742

 Score =  592 bits (306), Expect = e-173
 Identities = 333/342 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagaatccaggctggagataaactcacagcaaacatctttgagttgtctgctttgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgagaatccaggctggagataaactcacagcaaacatctttgagttgtctgctttgtca 483

                                                                       
Query: 61  tctttgctaatggacaaaacaagttattggaaaacctggaggaaacaacacagaacttaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 482 tctttgctaatggacaaaacaagttactggaaaacctggaggaaacaacacagaacttaa 423

                                                                       
Query: 121 ggaaaatcaagagagaaataaaaatgggattcaaggtgttaatcttttaacccaggaata 180
           |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 422 ggaaaatcaagagagagataaaaatggaattcaaggtgtgaatcttttaacccaggaata 363

                                                                       
Query: 181 gtatacacagtgtggaagattacccacaaggaaggctcctgaaaatattctagaacacag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtatacactgtgtggaagattacccacaaggaaggctcctgaaaatattctagaacacag 303

                                                                       
Query: 241 agtgaagatcctacaagaggcatgagaagttgcttagcaagcccttgctatctaagagag 300
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 302 agtgaagatcctacaagaggcatgagaagttccttagtaagcccttgctatctaagagag 243

                                                     
Query: 301 agattaaaaactgctattctttgattagtaaagaaattcctt 342
           | ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 242 aaattaaaaactgctattctttgattattaaagaaattcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)