BAC Information

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BAC

Clone NameMSMg01-316L13
Chromosome2 (Build37)
Map Location 146,399,807 - 146,400,225
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316L13.T7 (MSMg01no316_l13.b1)MSMg01-316L13.TJ (MSMg01no316_l13.g1)
ACCAG436994AG436995
length733704
length of high quality
(start - end)
560 (126 - 685)419 (44 - 462)
definitionCHROMAT_FILE: MSMg01no316_l13.b1 PHD_FILE: MSMg01no316_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:33 2005CHROMAT_FILE: MSMg01no316_l13.g1 PHD_FILE: MSMg01no316_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCTTTTAAATGCCGTTGTCAGGTTGTACCAGCATCACTTTATTAAAAACT
CTACTTTCTGCATTGTATTCTCCGTTGTTGTTCCTTTCTTAGAGAACAAC
TGCCTATATTTGCAGGGGTTTAATTCTGGTCTTTAATTGGTTCCAGTGCT
GGTTAATAGTTTGTCAATCTGACACAAACTAGTGTCACTTGGGAAGGGGG
ACTTCAGTTGAAGAATTGCTTCAGTGGACTCGCCTGTAGGCATGTCTATG
GGGCCTTCCTTCTCTTGATTGGCTTTTGATGAGGGATGACTCATTGGAGG
AAGTGAGTCTCTGGGGTGGGATTTGAGGTTTATAAACCTGGATCTACTTA
ACTCTGCTTCTTGGCACTGGAATGTGACTGGCTGCCAATCATGGTTGCTC
TGTCTTCTGTGCCATAATGGAATGTATCCTTTTAAACTGTAGACCAAATA
AACTCTCCCTTCATTAAATGTATCAGGCATTTGATCACAGCAATGAAACA
AATAATAAATACACATTGCACACTTACACAGATATCTGCACATCTATGGT
TATCATCTCACTATTCATAATAACCAAGATATGGAATCAGGCTTTATGTT
CATCAACAGAAAATAGGACATATTGCATGCAGTAGATATTATGCAACCAG
GAAGAAAAAAATCATGCTGTTTCAGGGAAATTA
CCTGGTACAAAAAATTGGGTGACACTATAGAATTTTCCGCAAAATTCTTT
GTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAAGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGTTTCTTTTACTTTCTAAGTCTTCTCAAACTCCCAGCAGTGCCCCTT
CCTATCCTGCATCTTATGATGAGTATAGACTGGCTTTTACTTTCTGAAAC
AGACTGACATTTGAATAAGTGAATATGGTGATAGCCTAGATCTAAGCATG
TTTCACATGCACAAACATACAGACATGTCCAGATACATACATGTATGCCC
ACACAGGCTTCATTCTCAGAGGGCCCCTTCCTACAGCTATGCACCGAGGC
CAGCAGCCTTAGGTAGCCTTGGAGAATGTCTCATGACCTTCATCCATAAA
GGTCAGAACAAGGAAGGCAATCTGAGCAGCCTCTAAAACCAGAGTTCTTC
TCAGTGTCCTACCCAGACAGTCAGAGCTATGGGGTCTGCACACTGCATCA
CACTAGCAATGGTGGCCTCAAGTGATTCAGGGGTAAGTGATAGGTAGTGA
GCGTTAACAGTGGGAACAAAAGCGGCTACATGTCCCCATGTGAATTTGCT
GAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_l13.g1 MSMg01no316_l13.g1 CHROMAT_FILE:
MSMg01no316_l13.g1 PHD_FILE: MSMg01no316_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:33 2005
         (419 letters)



>mm_chr2_146399607_146400425
          Length = 819

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttgttcagttctgagccccattttttaatggggttatttgattttctggagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttgttcagttctgagccccattttttaatggggttatttgattttctggagtcca 260

                                                                       
Query: 61  ccttcttgagttctttatatatgttggatattagtcccctatctgatttaggataagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcttgagttctttatatatgttggatattagtcccctatctgatttaggataagtaa 320

                                                                       
Query: 121 agatcctttcccaatctgttggtggtctttttgtcttattgtttcttttactttctaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcctttcccaatctgttggtggtctttttgtcttattgtttcttttactttctaagt 380

                                                                       
Query: 181 cttctcaaactcccagcagtgccccttcctatcctgcatcttatgatgagtatagactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctcaaactcccagcagtgccccttcctatcctgcatcttatgatgagtatagactgg 440

                                                                       
Query: 241 cttttactttctgaaacagactgacatttgaataagtgaatatggtgatagcctagatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttactttctgaaacagactgacatttgaataagtgaatatggtgatagcctagatct 500

                                                                       
Query: 301 aagcatgtttcacatgcacaaacatacagacatgtccagatacatacatgtatgcccaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcatgtttcacatgcacaaacatacagacatgtccagatacatacatgtatgcccaca 560

                                                                      
Query: 361 caggcttcattctcagagggccccttcctacagctatgcaccgaggccagcagccttag 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcttcattctcagagggccccttcctacagctatgcaccgaggccagcagccttag 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)